Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0547
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96100-6|CAB76719.1|  222|Caenorhabditis elegans Hypothetical pr...    32   0.38 
AL033124-1|CAB76736.1|  222|Caenorhabditis elegans Hypothetical ...    32   0.38 
AL032626-16|CAA21542.1|  101|Caenorhabditis elegans Hypothetical...    29   2.7  
AL110480-2|CAB60326.1|  244|Caenorhabditis elegans Hypothetical ...    29   4.7  

>Z96100-6|CAB76719.1|  222|Caenorhabditis elegans Hypothetical
           protein VH15N14R.1 protein.
          Length = 222

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 122 NGLRRNATVVCINHGQRTGWHRLSDHRETKQEKSER 229
           NGLR N  +   N  QRTGW +++D R  ++ +  R
Sbjct: 123 NGLRWNDGLEWNNRDQRTGWIKMADGRRRRRRRRRR 158


>AL033124-1|CAB76736.1|  222|Caenorhabditis elegans Hypothetical
           protein VH15N14R.1 protein.
          Length = 222

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 122 NGLRRNATVVCINHGQRTGWHRLSDHRETKQEKSER 229
           NGLR N  +   N  QRTGW +++D R  ++ +  R
Sbjct: 123 NGLRWNDGLEWNNRDQRTGWIKMADGRRRRRRRRRR 158


>AL032626-16|CAA21542.1|  101|Caenorhabditis elegans Hypothetical
           protein Y37D8A.19 protein.
          Length = 101

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 429 VSVCPGVDLALWNHRTCNEFPKVYSCSRCA 340
           +SV  G  + +WN+   N FP  ++CS  A
Sbjct: 11  ISVAAGQSI-IWNNNNANRFPSCFACSTAA 39


>AL110480-2|CAB60326.1|  244|Caenorhabditis elegans Hypothetical
           protein Y24F12A.3 protein.
          Length = 244

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 122 NGLRRNATVVCINHGQRTGWHRLSDHRETKQEKSERSK 235
           NG R N  +   N  QRTGW  ++D R  ++ +  R +
Sbjct: 123 NGSRWNDGLEWNNRDQRTGWIEMADGRRRRRRRRGRRR 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,130,291
Number of Sequences: 27780
Number of extensions: 364737
Number of successful extensions: 898
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)