Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0546
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 28 1.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 26 6.0
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 25 7.9
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 25 7.9
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 25 7.9
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 500 ISFSSTPIFRQASIKLSTFLLHLA-IVNLGL 589
ISF S P F+Q +LS F+L L + N+GL
Sbjct: 581 ISFLSKPTFKQLRCQLSLFILLLTRLENMGL 611
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 2.6
Identities = 21/88 (23%), Positives = 34/88 (38%)
Frame = +2
Query: 317 TSMLEQPRYRYSTRADSGASASFCRYVGGATRAAACLRTNSHTVMATCTVPLPSKTSAAQ 496
T++ P ST +S + V +T + NS T + + T S +
Sbjct: 1648 TALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 1707
Query: 497 HISFSSTPIFRQASIKLSTFLLHLAIVN 580
+ SSTPI + ST + +VN
Sbjct: 1708 SVLNSSTPITSSTVVNTSTPITSSTVVN 1735
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/77 (25%), Positives = 31/77 (40%)
Frame = +2
Query: 350 STRADSGASASFCRYVGGATRAAACLRTNSHTVMATCTVPLPSKTSAAQHISFSSTPIFR 529
ST +S + V +T + NS T + + TV S + + SSTPI
Sbjct: 1431 STVVNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 1490
Query: 530 QASIKLSTFLLHLAIVN 580
+ ST + +VN
Sbjct: 1491 STVVNTSTPITSSTVVN 1507
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/77 (24%), Positives = 31/77 (40%)
Frame = +2
Query: 350 STRADSGASASFCRYVGGATRAAACLRTNSHTVMATCTVPLPSKTSAAQHISFSSTPIFR 529
ST ++ + V +T + NS T + + TV S + + SSTPI
Sbjct: 1359 STVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITS 1418
Query: 530 QASIKLSTFLLHLAIVN 580
+ ST + +VN
Sbjct: 1419 STVVNTSTPITSSTVVN 1435
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/77 (24%), Positives = 31/77 (40%)
Frame = +2
Query: 350 STRADSGASASFCRYVGGATRAAACLRTNSHTVMATCTVPLPSKTSAAQHISFSSTPIFR 529
ST ++ + V +T + NS T + + TV S + + SSTPI
Sbjct: 2199 STVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITS 2258
Query: 530 QASIKLSTFLLHLAIVN 580
+ ST + +VN
Sbjct: 2259 STVVNTSTPITSSTVVN 2275
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/77 (24%), Positives = 31/77 (40%)
Frame = +2
Query: 350 STRADSGASASFCRYVGGATRAAACLRTNSHTVMATCTVPLPSKTSAAQHISFSSTPIFR 529
ST +S + + +T + NS T + + TV S + + SSTPI
Sbjct: 2223 STVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 2282
Query: 530 QASIKLSTFLLHLAIVN 580
+ ST + +VN
Sbjct: 2283 STVVNTSTPITSSTVVN 2299
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 56 ETYLNLKSLMRKSLM*NLHIHIPK*SKYIIVIFVH 160
ETY+ + L+R + L ++ PK K + IFVH
Sbjct: 58 ETYVQVYILLRDWIDGTLDLYKPKLQKVLYPIFVH 92
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 576 SIWGCAGEGTCTGSHGPRLHVVGEGG 653
S+WG GE G + +VGE G
Sbjct: 275 SLWGTIGENVANGKYRTYPKIVGETG 300
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 419 QRLVSLRPHSDRSWRSLRN 363
QR +LRP+ R W++L N
Sbjct: 430 QRATALRPYDQRMWQALGN 448
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 412 SRCVPPHQLAHRDGHLHGTLTFQDVGSATHQFLFDANFPTGLDKIVYVPPT 564
++C P + +HR+ +F + G+ FL+D F + +VY+ T
Sbjct: 672 NKCTPNKRDSHREPQTFNCDSFNEPGTEITSFLYD--FDEKIVDVVYLEGT 720
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,168
Number of Sequences: 5004
Number of extensions: 54780
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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