Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0546
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 32 0.50
10_08_0559 - 18771235-18771537 31 1.2
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012 29 3.5
10_08_0561 + 18787074-18787379 29 3.5
01_07_0096 - 41059668-41059886,41059978-41060154,41060575-410607... 29 3.5
10_08_0563 - 18811520-18811804 29 4.7
10_08_0560 - 18782806-18783108 28 6.2
09_06_0192 - 21450158-21450276,21451084-21451573,21451750-214518... 28 6.2
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322... 28 6.2
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559 28 6.2
04_04_0720 - 27543998-27544230,27544339-27544432,27544571-275448... 28 8.2
>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +2
Query: 389 RYVGGATRAAACLRTNSHTVMATCTVPLPSKTSAAQHISFSSTPIFRQASIKL 547
R VGGA AA ++SH+ +T + PL ++ Q SFS TP + S KL
Sbjct: 1028 RKVGGAGLAAKFEVSSSHSGNSTPSSPLSPSSTPKQSWSFSGTPSELKHSSKL 1080
>10_08_0559 - 18771235-18771537
Length = 100
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 383 FCRYVGGATRAAACLRTNSHTVMATCTVPLPS 478
FC+Y T A+ TN+ ++A C +PLP+
Sbjct: 67 FCQYAKDPTYASYINSTNARKMIAACGIPLPN 98
>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
Length = 296
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 344 RYSTRADSGASASFCRYVGGATRAAACLRTNSHTVMATCTVPLPSKTSAAQHISFSSTPI 523
R + R+ +S+S R GGA AAA ++S T + T S + A + P
Sbjct: 145 RNTKRSTKKSSSSSSRQGGGAGNAAAAATSSSSTTSTSTTATTSSAAAPAAAAAADPPPF 204
Query: 524 FRQ 532
+Q
Sbjct: 205 LQQ 207
>10_08_0561 + 18787074-18787379
Length = 101
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 383 FCRYVGGATRAAACLRTNSHTVMATCTVPLPS 478
FC+Y T A+ TN+ ++A C +P P+
Sbjct: 68 FCQYAKDPTYASYINSTNARKMIAACGIPFPN 99
>01_07_0096 -
41059668-41059886,41059978-41060154,41060575-41060778,
41060874-41061089,41061698-41061961,41062413-41062654,
41062728-41062851,41062852-41062991,41063349-41063397,
41063735-41063891,41063982-41064130,41064267-41064299,
41064497-41064575,41064961-41065040,41065438-41065560
Length = 751
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 528 RKIGVEEKLMCCAADVLEGKGTVQVAI 448
R++G+ LMCCAAD+L QV +
Sbjct: 628 RELGIALPLMCCAADMLSVPSRKQVVL 654
>10_08_0563 - 18811520-18811804
Length = 94
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 386 CRYVGGATRAAACLRTNSHTVMATCTVPLPS 478
C+Y T A+ TN+ +A C +P+PS
Sbjct: 63 CQYAKDPTYASYVNNTNARKTIAACGIPIPS 93
>10_08_0560 - 18782806-18783108
Length = 100
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 383 FCRYVGGATRAAACLRTNSHTVMATCTVPLPS 478
FC+Y A+ TN+ ++A C +PLP+
Sbjct: 67 FCQYAKDPMYASYINSTNARKMIAACGIPLPN 98
>09_06_0192 -
21450158-21450276,21451084-21451573,21451750-21451862,
21451992-21452376,21452461-21452529,21453165-21453264,
21454465-21454637,21454737-21454782,21454879-21454954,
21455160-21455196,21455799-21456041
Length = 616
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 250 YAITQKKKNSFRWSWLCKNDCPHVNVRATSVPLQHES*FRSERQLLSLCGRSDTSRCVPP 429
+ ++ + F W +LC D P + V S Q +S + + LLS S +CV P
Sbjct: 166 FEVSVRAYGDFCWPFLCCFDFPSLTVSTYSSHTQKKSQVLNMKMLLS-ANTSTVIKCVEP 224
>05_06_0156 -
26031463-26031572,26031961-26032039,26032133-26032261,
26032362-26032559,26032741-26032900,26032980-26033147,
26033290-26033405,26033491-26033586,26033675-26034058,
26035150-26035572,26037202-26037315,26037969-26038017,
26038103-26038262,26038345-26039014
Length = 951
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 279 TVFFFLCDSVCLNTPYIGDFTLRFYECSTYS 187
T + +L VCL Y+G+ TLRF+ +YS
Sbjct: 600 TTWMYLAVPVCL---YVGERTLRFFRSGSYS 627
>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
Length = 789
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 586 AVPVKARAREATARGFTWLAKXAQDXPVREYWR 684
A P++ARA+EATA W+A A + RE+ R
Sbjct: 546 APPLEARAKEATAMAKKWIAMVAGEAE-REHQR 577
>04_04_0720 -
27543998-27544230,27544339-27544432,27544571-27544898,
27545387-27545850
Length = 372
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = -1
Query: 541 YRGLSENWRRRETDVXXXXXXXXXXXRASGHHGVRVGAEA--RSGSCRSAHIATEAGARS 368
YR +WR ET A G H VR+ + R G+ S ++ +G+R
Sbjct: 7 YRRRESSWRGGETSARLHQGAAAMSNPAGGKHLVRLAGSSSLRGGAALSPAVSISSGSRP 66
Query: 367 GISSRAVAV 341
+ A A+
Sbjct: 67 ATRAGARAL 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,514,142
Number of Sequences: 37544
Number of extensions: 394994
Number of successful extensions: 1348
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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