Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0546
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27) 31 1.2
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 31 1.2
SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_27238| Best HMM Match : DUF433 (HMM E-Value=8.2) 29 4.8
SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23) 28 6.3
SB_23785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_56378| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10) 28 6.3
SB_51240| Best HMM Match : RVT_1 (HMM E-Value=0.93) 28 6.3
SB_45669| Best HMM Match : RVT_1 (HMM E-Value=0.14) 28 6.3
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 72.1 bits (169), Expect = 4e-13
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Frame = -2
Query: 699 LPEXXAPVLADGVVLCXLRQPREAAGRGFPCTCLHRHS---PKLTMARCRRNVDNFIEAC 529
LP+ LADGVVLC L +A +G +H S PKLTM +C +NVD F+EAC
Sbjct: 328 LPDDLPASLADGVVLCHLVN---SAYKG-TIPSIHIPSAGVPKLTMTKCMKNVDYFLEAC 383
Query: 528 RKIGVEEKLMCCAADVLEGKGTVQVAITV 442
+K+GV+ +L+C +AD+L+ K +V TV
Sbjct: 384 KKLGVDRELLCSSADILQEKSPQRVCATV 412
>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 407 TRAAACLRTNSHTVMATCTVP-LPSKTSAAQHISFSSTPIFRQASIKLSTF 556
T A+ T + TV +T T+ LP TSA+ I+ SSTP A+I +T+
Sbjct: 447 TPTASNAFTETTTVTSTTTITVLPQPTSASSSITPSSTPATGTATIATATY 497
>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
Length = 513
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 431 CGGTQRLVSLRPHSDRSWRSLRNQ 360
CGG +++V+L + D+SWR ++Q
Sbjct: 114 CGGIRKMVNLLNYQDKSWRKQKSQ 137
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 561 RRNVDNFIEACRKIGVEEKLMCCAADVLEGKGTVQVAITVCEL 433
R NV NFI CR++ V + +M D++ K V +T+ E+
Sbjct: 107 RDNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTLLEV 149
>SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Frame = +2
Query: 374 SASFCRYVGGATRAAACLRTNSHTVMATCTVPLPSK-----TSAAQHISFSSTPIFRQAS 538
+AS C++V ++ A L T H + +TC L S +S QH+ S+ P+ ++
Sbjct: 291 NASSCQFVPRSSPQLAILSTCQHVLSSTCQRVLSSTCQRILSSTCQHVPMSTRPVVNLST 350
Query: 539 ---IKLST 553
I LST
Sbjct: 351 RPLINLST 358
>SB_27238| Best HMM Match : DUF433 (HMM E-Value=8.2)
Length = 368
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 255 SVCLNTPYIGDFTLRFYECSTYSKYD 178
S C+ P + DFT + +C+ +SK D
Sbjct: 294 SRCIQAPIVEDFTHKLRDCNIFSKLD 319
>SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)
Length = 1268
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 255 SVCLNTPYIGDFTLRFYECSTYSKYD 178
S C+ P + DFT + +C +SK D
Sbjct: 502 SRCIQAPMVEDFTHKLRDCKIFSKLD 527
>SB_23785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 872
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 255 SVCLNTPYIGDFTLRFYECSTYSKYD 178
S C+ P + DFT + +C +SK D
Sbjct: 372 SRCIQAPMVEDFTHKLRDCKIFSKLD 397
>SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2306
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 255 SVCLNTPYIGDFTLRFYECSTYSKYD 178
S C+ P + DFT + +C +SK D
Sbjct: 607 SRCIQAPIVEDFTHKLRDCKIFSKLD 632
>SB_56378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 255 SVCLNTPYIGDFTLRFYECSTYSKYD 178
S C+ P + DFT + +C +SK D
Sbjct: 161 SRCIQAPIVEDFTHKLRDCKIFSKLD 186
>SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)
Length = 1318
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 255 SVCLNTPYIGDFTLRFYECSTYSKYD 178
S C+ P + DFT + +C +SK D
Sbjct: 838 SRCIQAPIVEDFTHKLRDCKIFSKLD 863
>SB_51240| Best HMM Match : RVT_1 (HMM E-Value=0.93)
Length = 157
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 255 SVCLNTPYIGDFTLRFYECSTYSKYD 178
S C+ P + DFT + +C +SK D
Sbjct: 11 SRCIQAPIVEDFTHKLRDCKIFSKLD 36
>SB_45669| Best HMM Match : RVT_1 (HMM E-Value=0.14)
Length = 682
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 255 SVCLNTPYIGDFTLRFYECSTYSKYD 178
S C+ P + DFT + +C +SK D
Sbjct: 476 SRCIQAPIVEDFTHKLRDCKIFSKLD 501
>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1787
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 255 SVCLNTPYIGDFTLRFYECSTYSKYD 178
S C+ P + DFT + +C +SK D
Sbjct: 416 SRCIQAPIVEDFTHKLRDCKIFSKLD 441
>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 406 DTSRCVPPHQLAHRDGHLHGTLTFQDVGSATHQFLFD 516
D + P L +L GT+TF+DV +Q + D
Sbjct: 246 DVEFIIQPRNLCALRSYLRGTVTFEDVSEKRYQGVID 282
>SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 666 GVVLCXLRQPREAAGRGFPCTCLHRHSPKLTMARCRRNVDNFIEACRKIGVEEKLMCCAA 487
GV ++Q ++AG F C + A CR + ++ E C KIG +CC +
Sbjct: 1002 GVNQLRVQQKPDSAGPKFDGRCHRCNKQGHKAADCRCSQNHHCEKCGKIG--HFKVCCKS 1059
Query: 486 DVLEGK 469
GK
Sbjct: 1060 KQTSGK 1065
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,143,954
Number of Sequences: 59808
Number of extensions: 449919
Number of successful extensions: 1153
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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