Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0546
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical pr...    43   2e-04
U97013-5|AAB52338.1|  142|Caenorhabditis elegans Calponin protei...    33   0.15 
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    27   9.8  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF016430-7|AAL08025.1|  162|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC024763-2|AAK68885.2|  411|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC024763-1|AAK68886.1|  411|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical
           protein C14F11.2 protein.
          Length = 638

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = -2

Query: 579 LTMARCRRNVDNFIEACRKIGVEEKLMCCAADVLEGKGTVQVAITV 442
           +   R + NVD F++ CRKIGV E  +C   D++  +   +VA TV
Sbjct: 576 IATTRSKMNVDRFLQYCRKIGVPETTLCSQMDIISKRNPQKVARTV 621


>U97013-5|AAB52338.1|  142|Caenorhabditis elegans Calponin protein 3
           protein.
          Length = 142

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/82 (23%), Positives = 37/82 (45%)
 Frame = -2

Query: 678 VLADGVVLCXLRQPREAAGRGFPCTCLHRHSPKLTMARCRRNVDNFIEACRKIGVEEKLM 499
           +L DG +LC        A  G     + +    ++   C  N++ F+E  +K GV  +  
Sbjct: 54  LLKDGTLLCK-------AANGIEAGSIKKVQKPISTFACMENINAFVEFAKKQGVPNEET 106

Query: 498 CCAADVLEGKGTVQVAITVCEL 433
             + +++EG+    V +T+  L
Sbjct: 107 FQSVELVEGRDLFSVCVTLLSL 128


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
           glp-1 protein.
          Length = 1492

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 623 PAASRGWRRXHRTTPSASTGAXCSG 697
           P A RG++  H   P A TG+  SG
Sbjct: 848 PGAQRGYQGPHSPVPGALTGSQASG 872


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
           protein Y53H1C.2a protein.
          Length = 1512

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 623 PAASRGWRRXHRTTPSASTGAXCSG 697
           P A RG++  H   P A TG+  SG
Sbjct: 868 PGAQRGYQGPHSPVPGALTGSQASG 892


>AF016430-7|AAL08025.1|  162|Caenorhabditis elegans Hypothetical
           protein C05C8.9b protein.
          Length = 162

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 389 DRSWRSLRNQLSCCSGTEVALTLT*GQSFLHNHDQRKLFF 270
           DR+WRS+   +  C+G    LT +     L N D    FF
Sbjct: 123 DRAWRSIHRAMETCNGATEVLTFS-FFFLLKNADFHSRFF 161


>AC024763-2|AAK68885.2|  411|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.4a protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 564 ILPLSIWGCAGEGT 605
           IL + +WGCAG GT
Sbjct: 323 ILDIEVWGCAGAGT 336


>AC024763-1|AAK68886.1|  411|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.4b protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 564 ILPLSIWGCAGEGT 605
           IL + +WGCAG GT
Sbjct: 323 ILDIEVWGCAGAGT 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,551,326
Number of Sequences: 27780
Number of extensions: 323277
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)