Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0546
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.5  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 276 VFFFLCDSVCLNTPYIGDFTLR 211
           +F F C + C+N    G F +R
Sbjct: 301 LFLFACTNSCMNPIVYGAFNIR 322


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 409  TSRCVPPHQLAHRDGHLHGT 468
            TS+ VPP+QL H    L  T
Sbjct: 1226 TSQKVPPNQLTHEASELDKT 1245


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 260 HKKKKTVSVGRGYARMIVLTSMLEQPRYRYSTRADSGASAS 382
           H ++  + V  GY R +   + + +P Y  +T A +    S
Sbjct: 198 HPQQHGLGVQNGYGRHLPGHAQMGRPSYTTATMATTSTPGS 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,228
Number of Sequences: 438
Number of extensions: 3882
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)