Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0546
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64830.1 68414.m07350 aspartyl protease family protein contai...    29   3.0  
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi...    28   5.2  
At5g56290.1 68418.m07026 peroxisomal targeting signal type 1 rec...    28   6.8  
At1g14430.1 68414.m01711 glyoxal oxidase-related low similarity ...    28   6.8  

>At1g64830.1 68414.m07350 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 431

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = +2

Query: 275 TVSVGRGYARMIVLTSMLEQPRYRYSTRADSGASASFCRYVGGATRAAACLRTNSHTVMA 454
           TV++G    R + L +M+    +  +   D  A +      GG+T   + LR + +   +
Sbjct: 181 TVTMGSSGRRPVSLRNMIIGCGHENTGTFDP-AGSGIIGLGGGSTSLVSQLRKSINGKFS 239

Query: 455 TCTVPLPSKTSAAQHISFSSTPI 523
            C VP  S+T     I+F +  I
Sbjct: 240 YCLVPFTSETGLTSKINFGTNGI 262


>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
           protein associated factor (GI:2827282) [Homo sapiens];
           similar to Transcription initiation factor TFIID 150 kDa
           subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
           [Drosophila melanogaster]
          Length = 1390

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 436 LAHRDGHLHGTLTFQDVGSATHQFLFDANFPTGLDKIVYVPP 561
           L H    L  T+ F     + ++    ANFP G  K V++PP
Sbjct: 273 LPHDLSRLRNTMEFFHEAYSYYEDYLSANFPFGFYKQVFLPP 314


>At5g56290.1 68418.m07026 peroxisomal targeting signal type 1
           receptor (PEX5) identical to GI:3603353; contains Pfam
           profile PF00515 TPR Domain
          Length = 728

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 416 RLVSLRPHSDRSWRSLRNQLSCCS 345
           R +++ P +D +W+ LR  LSC S
Sbjct: 683 RALAMNPKADNAWQYLRLSLSCAS 706


>At1g14430.1 68414.m01711 glyoxal oxidase-related low similarity to
           glyoxal oxidase precursor (glx1) [Phanerochaete
           chrysosporium] GI:1050302
          Length = 849

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 342 YRGCSNIDVRTIILA*PRPTETVFFFLCDSVC 247
           +RG  ++ V  I +  P P E +F F+C S C
Sbjct: 552 HRGIPSVAVWEISVKTPTPREKIFDFVCPSSC 583


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,527,501
Number of Sequences: 28952
Number of extensions: 295724
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)