Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0543
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 32 0.10
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 29 0.54
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 0.94
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 3.8
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 5.0
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 5.0
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 5.0
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 6.6
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 6.6
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.7
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 25 8.7
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 8.7
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 31.9 bits (69), Expect = 0.10
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = +1
Query: 97 TDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAK 276
T S P + S + S + P +A++ +S + AST A + SRS PT
Sbjct: 299 TTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTIISRSSKPT-----D 353
Query: 277 TPKTFPDARTTMEN 318
T + A TT EN
Sbjct: 354 TTNSISFANTTPEN 367
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 29.5 bits (63), Expect = 0.54
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 115 PPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTP 282
P +RS +L S V LIP + + + S + PAS P S S + + V + P
Sbjct: 439 PSIRSLSLRPSQVPLIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMP 494
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 28.7 bits (61), Expect = 0.94
Identities = 25/90 (27%), Positives = 38/90 (42%)
Frame = +1
Query: 97 TDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAK 276
+DSA+ PPV ++ RS V+ P+ I SV PS + P +
Sbjct: 509 SDSASPPPVPRLSITRSQVSREPEKPEEIPSV-------PPLPSNFKDKGHVPQQRSVSY 561
Query: 277 TPKTFPDARTTMENWI*RRSARVSSSPGSR 366
TPK D +++ + S+ V S P R
Sbjct: 562 TPKRSSDTSESLQPSLSFASSNVLSEPFDR 591
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/87 (25%), Positives = 42/87 (48%)
Frame = +1
Query: 103 SAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTP 282
S++QP V S T + + + P + S ++ +S+ +PS S + T ++L T+ P
Sbjct: 183 SSSQPSVSS-TSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIP 241
Query: 283 KTFPDARTTMENWI*RRSARVSSSPGS 363
T + +T + S+ +SS S
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSS 268
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.8
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Frame = +1
Query: 97 TDSAAQPPVRSPTLARSAVT---LIPKIAVNITSV-------SRALPASTVAPSEPFSRS 246
TD PP S T + S +T +IP + T+ S LP+S ++ + S S
Sbjct: 184 TDIVTLPPPASSTSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSS 243
Query: 247 ETPTALVTA-KTPKT 288
PT+++T+ TP T
Sbjct: 244 VLPTSIITSTSTPVT 258
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 100 DSAAQPPVRSPTLARSAV-TLIPKIAVNITSVSRALPASTVAPSEPFS 240
+S+AQ P A SA T P TS AST++PS PFS
Sbjct: 349 NSSAQSPHPRVFSANSAFSTTSPPPLTPSTSRDYPFSASTISPSTPFS 396
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 271 QLPVPSASPILKTVPMGQP 215
+LPVPS +PIL T P+ P
Sbjct: 56 KLPVPSTNPILTTEPIVGP 74
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +1
Query: 103 SAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTA 261
SAA V +P ++ +A + ++ ++S + +ST++ + S S +PT+
Sbjct: 238 SAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPTS 290
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 6.6
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 97 TDSAAQPPVRSPTLARSAVTLIPKIAVNITS-VSRALPASTVAPSEPFSRSE-TPTALVT 270
T + V S SA I + + TS VS +P+S ++ + P S SE TP +
Sbjct: 185 TPTTVAASVASSVDTDSASATISSVVDSATSSVSTVIPSSIISAAPPDSASESTPASTSY 244
Query: 271 AKTPKTFPDARTT 309
A + + TT
Sbjct: 245 ASSTTSATSTSTT 257
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +1
Query: 166 KIAVNITSVSRALP---ASTVAPSEPFSRSETPTA 261
KI +T +P AS+ PSE SR+ETPTA
Sbjct: 478 KIVNPVTHTEVVVPQKNASSPNPSETNSRAETPTA 512
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 97 TDSAAQPPVRSPTLARSAV 153
++SAA PPV SP L RS +
Sbjct: 479 SNSAASPPVSSPGLRRSHI 497
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/52 (21%), Positives = 25/52 (48%)
Frame = +1
Query: 13 PRXLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPK 168
P+ +P TES S ++ + K+ ++ AQP + + +++ + K
Sbjct: 366 PQSIPATESETSDDSSFSYKRSPCKRKLVEATAQPAISTSVAEGASLAQVSK 417
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 127 SPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTA 261
S A S T P A + T VS+ + AST +EP ++ TP++
Sbjct: 316 SADTAGSPATSPPATADSKTIVSKTISASTTQQTEPLQQT-TPSS 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,179
Number of Sequences: 5004
Number of extensions: 51604
Number of successful extensions: 145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -