Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0543
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 34 0.14
04_04_0248 - 23891684-23892064 32 0.56
02_05_0158 - 26362259-26362695,26363732-26363903 32 0.56
09_06_0280 + 22010270-22011407,22011890-22013097 31 1.3
07_03_0907 - 22490158-22490555,22490647-22491250 29 3.9
03_05_1129 - 30595580-30595771,30596119-30597162 29 3.9
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 29 5.2
03_06_0316 + 33091194-33091370,33091451-33092155 29 5.2
04_01_0615 - 8060085-8060972 28 9.1
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 9.1
02_01_0722 + 5405550-5405810,5406654-5407399,5407575-5408046,540... 28 9.1
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701... 28 9.1
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 33.9 bits (74), Expect = 0.14
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 31 TESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAV---TLIPKIAVNITSVSRA 201
T P + R K QT +A +PP+R A + + T +P + N +SVS
Sbjct: 261 TSPPHKNSHIPRALPPKESSSQTGTAHKPPIRGSAPAETPLPQNTNMPAVPKNGSSVSHD 320
Query: 202 LPASTVAPSEPFSRS 246
P STVA +P + S
Sbjct: 321 RPPSTVAAPKPATSS 335
>04_04_0248 - 23891684-23892064
Length = 126
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/82 (29%), Positives = 33/82 (40%)
Frame = +1
Query: 49 ACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPS 228
A RFRSA + AA R A +A+ L+P A T+ PA+ AP
Sbjct: 39 AAAATRFRSAAAAASRMRLAAAAATRMRPAAAAAMPLLPSAA---TAARMWPPAAKAAPM 95
Query: 229 EPFSRSETPTALVTAKTPKTFP 294
P + + P TA + P
Sbjct: 96 HPAAATAAPLQSATASVVRMCP 117
>02_05_0158 - 26362259-26362695,26363732-26363903
Length = 202
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 166 KIAVNITSVSRALPASTVAPSEPFSRSE-TPTALVTAKTPKTFPDARTTMENWI*RRSAR 342
K+AV +++ + P T + S P + + TP++ TP + PDA TT + +
Sbjct: 117 KLAVTVSAAAATTPTPTASSSPPSTATPATPSSDPGMDTPSSTPDATTTPTTTTTKSTGS 176
Query: 343 VSSSPGS 363
+ GS
Sbjct: 177 TGGASGS 183
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +3
Query: 81 NEEVANGFGCPAPGEVSNAGSFSRHAH----PEDCRKYYICLEGVAREYGCPIGTVFKIG 248
N + AN + CP PGE + S +++ ++ R Y+C + G + G
Sbjct: 275 NNQAANNWSCPTPGEARRSACISNNSYCHNVTDNYRSGYVCRCDDGYD-----GNPYVAG 329
Query: 249 DADGTGNCEDPEDVPGC 299
CE P++ GC
Sbjct: 330 GCQDINECERPKE-HGC 345
>07_03_0907 - 22490158-22490555,22490647-22491250
Length = 333
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 160 IPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTMENWI*RRSA 339
+P +AV +V+ + V E + P + + KT P+A EN+ RSA
Sbjct: 95 VPVVAVPAPAVTMPMEVPVVPVPEAMAPEPIPVEVTVPEVVKTAPEAEEAEENFTISRSA 154
>03_05_1129 - 30595580-30595771,30596119-30597162
Length = 411
Score = 29.1 bits (62), Expect = 3.9
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +1
Query: 37 SPASACGLIRFRSAKTKK*QTDSA-AQPPVRSPTLARSAVTLIPK-IAVNITSVSRALPA 210
SP+ A L R + T + + A A PP S AR VTL P+ +A T+ + A P
Sbjct: 175 SPSGAWSLRDVRGSPTGSIEVELASAAPPEASGVEARCVVTLHPEALATEFTARNAASP- 233
Query: 211 STVAPSEPFS---RSETPTA 261
S VA S S R TP A
Sbjct: 234 SPVALSAAVSTHLRVSTPDA 253
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Frame = +1
Query: 124 RSPTLARSAVTLIPKIAVNITSVS------RALPASTVAPSEPFSRSETPTALVTAKTPK 285
R T S L+P + + S S + LP+ T+ +P R E+ T KTP
Sbjct: 251 RQTTSTESRTVLVPPPSAGMISTSFSSQREQPLPSETIRQDKPSPRKESNFFTTTEKTPS 310
Query: 286 T 288
T
Sbjct: 311 T 311
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Frame = +1
Query: 22 LPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRA 201
LP T +PA+A + +A K + +AA+P + A++ + A
Sbjct: 121 LPPTRAPAAAKPKAKPAAAAKPKPKPKAAAKPKAAAKPKAKAPAKSKAAAKPKAAAKPAA 180
Query: 202 LPASTVAPSEPFSRSETPTALVTAKT-PKTFPDAR 303
P + P P + P A AK P P A+
Sbjct: 181 KPKAAAKPKSPAKPAAKPKAAPKAKAKPAAKPKAK 215
>04_01_0615 - 8060085-8060972
Length = 295
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +1
Query: 1 LSVQPRXLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVN 180
L+ P LP++ A+ + S+ QP V +P+ S + +
Sbjct: 71 LATAPPSLPSSLFAATVEETVMTASSPLPLPHPAEVLQPLVAAPSSQMSFASKAAAVLPC 130
Query: 181 ITSVSRALPASTVAPSEP 234
+T+V ALP + PS+P
Sbjct: 131 LTTVGPALPGAPSTPSQP 148
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/52 (26%), Positives = 19/52 (36%)
Frame = +3
Query: 111 PAPGEVSNAGSFSRHAHPEDCRKYYICLEGVAREYGCPIGTVFKIGDADGTG 266
PAPG + A H+HP C+ +C G +G G G
Sbjct: 9 PAPG-LLRAACLRSHSHPLQCKALELCFNVALNRLPASAGASPLLGHGHGVG 59
>02_01_0722 +
5405550-5405810,5406654-5407399,5407575-5408046,
5408129-5408296,5408301-5408418,5408845-5409056,
5409165-5409287,5409395-5409880,5409976-5410401
Length = 1003
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 329 LQIQFSIVVLASGNVFGVFAVTSAVGVSDLENGSDGATVLAGNALE 192
LQ S++V+A G+ A +AV V+ + S G + GNALE
Sbjct: 611 LQFGISVLVVACPCALGL-ATPTAVMVATGKGASQGVLIKGGNALE 655
>01_07_0344 -
42869465-42869502,42869597-42869771,42869923-42870117,
42870678-42870788,42870899-42871111,42871551-42871658,
42871732-42871873,42872150-42873449,42874032-42874085,
42874491-42874923
Length = 922
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 257 VGVSDLEN--GSDGATVLAGNALETDVIFTAIFGMSVTAERASVGD 126
+G +D +N GS + N +E+D + +A+ GM++++ RA G+
Sbjct: 274 LGATDKKNNVGSSSFNCSSPNIIESDDLVSALSGMNLSSSRAMNGN 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,837,084
Number of Sequences: 37544
Number of extensions: 397914
Number of successful extensions: 1386
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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