Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0543
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17) 36 0.027
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.046
SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18) 35 0.061
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 35 0.081
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14) 34 0.14
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_54736| Best HMM Match : TF_Otx (HMM E-Value=1.7) 32 0.57
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 32 0.57
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 32 0.57
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1) 31 1.3
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17) 31 1.3
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15) 31 1.3
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5) 30 1.7
SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_44302| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68) 30 2.3
SB_42153| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 3.0
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_58975| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_12699| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05) 29 5.3
SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05) 29 5.3
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3) 29 5.3
SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24) 29 5.3
SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 28 7.0
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 28 7.0
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 28 7.0
SB_23347| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_22100| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25) 28 9.3
SB_12790| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061) 28 9.3
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_21877| Best HMM Match : TF_Otx (HMM E-Value=3.1) 28 9.3
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 9.3
SB_4715| Best HMM Match : FlpD (HMM E-Value=1.1) 28 9.3
>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
Length = 225
Score = 36.3 bits (80), Expect = 0.027
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 153 HAHPEDCRKYYICLEGVAREYGCPIGTVFKIGDADGTGNCEDPEDVPGCEDYY 311
+ HP+ C+ Y C G+A E CP G + D C+ P + P CE +Y
Sbjct: 94 YPHPDFCKMYIACSNGIAYEMPCPAGLNWN----DEKKYCDWPFNAP-CEGWY 141
>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 35.9 bits (79), Expect = 0.035
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 70 RSAKTKK*QT-DSAAQPPVRS--PTLARSAVTLIPKIAVNITSVSRALPASTVA--PSEP 234
+SA++ K Q+ +S+ PP R PTL + +P + N S+ALP +A P P
Sbjct: 381 KSAESSKQQSLNSSEVPPKRRIIPTLVIGSKCPVPDASENSAEKSKALPVKRIAPLPISP 440
Query: 235 FSRSETPTALVTAKT 279
S+ PTA+ + T
Sbjct: 441 GGFSDNPTAICSEST 455
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 35.5 bits (78), Expect = 0.046
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Frame = +1
Query: 25 PTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLAR-SAVTLIPKIAVNITS-VSR 198
PT SP + ++ T T S P +PT A + T PK TS +++
Sbjct: 36 PTKPSPTTPTSTAPTQTTPTPT--TPSPTAPTQTTPTPATPTPTTPTPKTPTPTTSTLTK 93
Query: 199 ALPASTVAPSEPFSRSETPTA-LVTAKTPKTFPDART 306
PA+T P++P + TPT TA TP T P +T
Sbjct: 94 PTPATTPTPTKPTPTAHTPTTPTPTAHTP-TKPTPKT 129
>SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18)
Length = 123
Score = 35.1 bits (77), Expect = 0.061
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 153 HAHPEDCRKYYICLEGVAREYGCPIGTVFKIGDADGTGNCEDPEDVPGCED 305
+AHPE+C+ Y C + E CP G + D C+ P++ P CE+
Sbjct: 70 YAHPENCKMYITCSNKITYERQCPAGLNWN----DAKKWCDWPKNAP-CEE 115
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 34.7 bits (76), Expect = 0.081
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +1
Query: 94 QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTA 273
+T +AAQ V + T A T++P+ ++ + + A PA+T+AP E + +T A T
Sbjct: 3007 ETTAAAQTTVAAETTAAPETTIVPE-TTSVPATTDA-PATTLAP-ETTAAPKTTVAPETT 3063
Query: 274 KTPKTFPDARTTM 312
P+T TTM
Sbjct: 3064 VAPETTDAPATTM 3076
Score = 31.1 bits (67), Expect = 1.00
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Frame = +1
Query: 25 PTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPK-IAVNITSVSRA 201
PTT SPA++ + T + +A T + +++P+ + + + + +
Sbjct: 306 PTTASPATSPSTVAQERETTMAHEATAAPATTTAPETTVITETSVVPETLKTTMAAETTS 365
Query: 202 LPASTVAP--SEPFSRSETPTALVTAKTPKTFPDARTTM 312
P +T+AP +E + ET A T P+T TT+
Sbjct: 366 APETTLAPESTENATAPETTIAPETTMAPETTMAPETTI 404
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +1
Query: 94 QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTA 273
+T +A + + T A T+ P+ + + A P +T+A SE + ET A T
Sbjct: 568 ETTAALETTMAPETTAARETTVAPE--TTLAPKTTATPETTLA-SETTASPETTAAPATT 624
Query: 274 KTPKTFPDARTTM 312
P+T TTM
Sbjct: 625 MAPETTEAIETTM 637
>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
Length = 480
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 153 HAHPEDCRKYYICLEGVAREYGCPIG 230
+AHP C Y C G+A E CP G
Sbjct: 344 YAHPSKCDMYITCSNGIAHEMPCPAG 369
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 153 HAHPEDCRKYYICLEG--VAREYGCPIGTVFKIGDADGTGNCEDPEDVPGCEDYYG 314
+A +C Y C G +A + CP G F + G C+ P +VPGC G
Sbjct: 324 YADSSNCNLYITCSNGFTIANRH-CPTGLAFN----EAIGMCDYPSNVPGCSGSSG 374
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 32.7 bits (71), Expect = 0.33
Identities = 24/74 (32%), Positives = 31/74 (41%)
Frame = +1
Query: 94 QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTA 273
+T +A + T A T P+ S + A P +T AP E + SET L T
Sbjct: 686 ETTAAPETTAAPETTAAPETTAAPE--TTSASETTAAPETTTAP-ETTAASETTAVLETT 742
Query: 274 KTPKTFPDARTTME 315
PKT TT E
Sbjct: 743 AAPKTTAAPETTAE 756
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Frame = +1
Query: 94 QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAP-----SEPFSRSETPT 258
+T A + T A T+ P+ +T + A P +T AP SE + SET
Sbjct: 518 ETTIAPETTATPETTAAPETTVAPE--TTMTPETTAAPETTTAPETTAASETTAASETTA 575
Query: 259 ALVTAKTPKTFPDARTT 309
A T PKT TT
Sbjct: 576 APKTTAAPKTSAAPETT 592
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 99 GFGCPAPGEVSNAGSFS-RHAHPEDCRKYYICLEGVAREYGCPIGTVF 239
G PA E AG +A P+DC YY C +G + + CP G F
Sbjct: 217 GKATPAEDEKFCAGKTDGTYADPKDCSAYYQCKKGRSFKKFCPDGLKF 264
>SB_54736| Best HMM Match : TF_Otx (HMM E-Value=1.7)
Length = 123
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 157 LIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKT 279
L P+ SVS +PASTV+ S P RS P+ ++A T
Sbjct: 19 LAPRAFATAPSVSE-VPASTVSSSSPLRRSPGPSGTISAST 58
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 31.9 bits (69), Expect = 0.57
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = +1
Query: 31 TESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAV---TLIPKIAVNITSVSRA 201
++S SA RS + + +A+ PV +PT A +A T P V T+ A
Sbjct: 16 SKSKTSAARSSVIRSLMSAEASLTAASAAPV-TPTAAPAAPVTPTAAPAAPVTPTAAPAA 74
Query: 202 LPASTVAPSEPFSRSETPTALVTAKTPKTFPDA 300
T AP+ P + + P A VT + P A
Sbjct: 75 RVTPTAAPAAPVTPTAAPAARVTPTAARVTPTA 107
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Frame = +1
Query: 88 K*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALV 267
K +T +A +RS A +++T V T+ A T AP+ P + + P A V
Sbjct: 17 KSKTSAARSSVIRSLMSAEASLTAASAAPVTPTAAPAAPVTPTAAPAAPVTPTAAPAARV 76
Query: 268 TAK-------TPKTFPDARTT 309
T TP P AR T
Sbjct: 77 TPTAAPAAPVTPTAAPAARVT 97
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 31.9 bits (69), Expect = 0.57
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = +1
Query: 31 TESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAV---TLIPKIAVNITSVSRA 201
++S SA RS + + +A+ PV +PT A +A T P V T+ A
Sbjct: 173 SKSKTSAARSSVIRSLMSAEASLTAASAAPV-TPTAAPAAPVTPTAAPAAPVTPTAAPAA 231
Query: 202 LPASTVAPSEPFSRSETPTALVTAKTPKTFPDA 300
T AP+ P + + P A VT + P A
Sbjct: 232 RVTPTAAPAAPVTPTAAPAARVTPTAARVTPTA 264
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Frame = +1
Query: 88 K*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALV 267
K +T +A +RS A +++T V T+ A T AP+ P + + P A V
Sbjct: 174 KSKTSAARSSVIRSLMSAEASLTAASAAPVTPTAAPAAPVTPTAAPAAPVTPTAAPAARV 233
Query: 268 TAK-------TPKTFPDARTT 309
T TP P AR T
Sbjct: 234 TPTAAPAAPVTPTAAPAARVT 254
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 31.5 bits (68), Expect = 0.76
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +1
Query: 22 LPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRA 201
LPT+ +PA+ S K +T P S + SA T P + + TS + A
Sbjct: 143 LPTSSTPATQNPTDSSLSTKPPTKKTGETQSPTENSISTEESATTPTPSGSTSPTSPNNA 202
Query: 202 LPASTVAPSE 231
P S+ P E
Sbjct: 203 SPQSSTRPGE 212
>SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1)
Length = 172
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/73 (32%), Positives = 32/73 (43%)
Frame = +1
Query: 64 RFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSR 243
RF A+ K T +A PP +P A T P A T+ A PA+T P+ +
Sbjct: 107 RFMRAQRK---TPAATTPPTGAP-----AATTPPTAAPAATTPPTAAPAATTPPTGAPAA 158
Query: 244 SETPTALVTAKTP 282
+ PT A TP
Sbjct: 159 TTPPTGAPAATTP 171
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 148 AVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
A T P A T+ A PA+T P+ + + PT A TP T A TT
Sbjct: 117 AATTPPTGAPAATTPPTAAPAATTPPTAAPAATTPPTGAPAATTPPTGAPAATT 170
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 196 RALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
R PA+T P+ + + PTA A TP T A TT
Sbjct: 113 RKTPAATTPPTGAPAATTPPTAAPAATTPPTAAPAATT 150
>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
Length = 1470
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 154 TLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTME 315
+L+P++ I +V PA+ + +P S T + T + P+T ++TT E
Sbjct: 819 SLVPQLGTTIATVGLTTPAAKPSSVKPTSNPATVLSDGTTENPETTEASKTTTE 872
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 303 DYYGELDLKAIRKSEL--LAGLQADGQPRPNQPKQLKPRPP 419
D + +D+ + R S L LAG Q RP + LKP PP
Sbjct: 927 DKHSHMDITSARPSSLGALAGTQPRSDTRPGHSEGLKPPPP 967
>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
Length = 1215
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/82 (26%), Positives = 30/82 (36%)
Frame = +3
Query: 57 ADQVPECKNEEVANGFGCPAPGEVSNAGSFSRHAHPEDCRKYYICLEGVAREYGCPIGTV 236
A + P + + A GF C G + S + C C G A GCP GT
Sbjct: 1126 AKEFPSSNSGDCAAGFYC-VQGVNTPRPSTNFSGIGGVCPPGAYCPLGTAEPIGCPNGTF 1184
Query: 237 FKIGDADGTGNCEDPEDVPGCE 302
+ + G+C D CE
Sbjct: 1185 SNVSQLESAGDCTLCSDGMYCE 1206
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +3
Query: 96 NGFGCPAPGEVSNAGSFSRHAHPEDCRKYYICLEGVAREYGCPIGTVFKIGDADGTGNCE 275
N F C A G SN R E C + + C EG + CP GT + A +C+
Sbjct: 388 NQFPC-ASGTYSNKTGNVRWEQCEPCIEGHYCPEGTSVPTKCPRGTYNDVLSAKSPTDCK 446
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 138 GSFSRHAHPEDCRKYYICLEGVAREYGCPIGT 233
G + + C K + C EG+ E CP+GT
Sbjct: 868 GGLTNVSEATSCSKAHYCPEGIEAEVPCPVGT 899
>SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +1
Query: 28 TTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALP 207
TT+ P + + + ++ Q + P +SPT S I N T + A
Sbjct: 592 TTQLPTTQLPTTQMPTTQSPTAQMSTTQSPTAQSPTAQMSTTDAGDIIRGNTTQLPTAQM 651
Query: 208 ASTVAPSEPFSRSETPTA 261
++T +P+ +++PTA
Sbjct: 652 STTQSPTTQLPTTQSPTA 669
>SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5)
Length = 128
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 157 LIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKT 279
L P SVS +PASTV+ S P RS P+ ++A T
Sbjct: 46 LAPCALATAPSVSE-VPASTVSSSSPLRRSPGPSGTISAST 85
>SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 148 AVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
A T P A T+ A PA+T P+ + + PT A TP T A TT
Sbjct: 184 AATTPPTGAPAATTPPTAAPAATTPPTAAPAATTPPTGAPAATTPPTGAPASTT 237
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/73 (31%), Positives = 32/73 (43%)
Frame = +1
Query: 64 RFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSR 243
RF A+ K T +A PP +P A T P A T+ A PA+T P+ +
Sbjct: 174 RFMRAQRK---TPAATTPPTGAP-----AATTPPTAAPAATTPPTAAPAATTPPTGAPAA 225
Query: 244 SETPTALVTAKTP 282
+ PT + TP
Sbjct: 226 TTPPTGAPASTTP 238
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 196 RALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
R PA+T P+ + + PTA A TP T A TT
Sbjct: 180 RKTPAATTPPTGAPAATTPPTAAPAATTPPTAAPAATT 217
>SB_44302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 94 QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTA 273
+T +A PP +P A T P A T+ A PA+T P+ + + PT A
Sbjct: 4 KTPAATTPPTGAP-----AATTPPTAAPAATTPPTAAPAATTPPTGAPAATTPPTGAPAA 58
Query: 274 KTP 282
TP
Sbjct: 59 TTP 61
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 148 AVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
A T P A T+ A PA+T P+ + + PT A TP T A TT
Sbjct: 7 AATTPPTGAPAATTPPTAAPAATTPPTAAPAATTPPTGAPAATTPPTGAPAATT 60
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 196 RALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
R PA+T P+ + + PTA A TP T A TT
Sbjct: 3 RKTPAATTPPTGAPAATTPPTAAPAATTPPTAAPAATT 40
>SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)
Length = 1113
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 142 RSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTAL-VTAKTPKT 288
R+A T IP A ++S+S AST AP+ P + T TA + A TP T
Sbjct: 319 RTAATTIPASAT-VSSISTTASAST-APTNPSFATTTVTATSICASTPVT 366
>SB_42153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 148 AVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
A T P A T+ A PA+T P+ + + PT A TP T A TT
Sbjct: 70 AATTPPTGAPAATTPPTAAPAATTPPTAAPAATTPPTGAPAATTPPTGAPASTT 123
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/73 (31%), Positives = 32/73 (43%)
Frame = +1
Query: 64 RFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSR 243
RF A+ K T +A PP +P A T P A T+ A PA+T P+ +
Sbjct: 60 RFMRAQRK---TPAATTPPTGAP-----AATTPPTAAPAATTPPTAAPAATTPPTGAPAA 111
Query: 244 SETPTALVTAKTP 282
+ PT + TP
Sbjct: 112 TTPPTGAPASTTP 124
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 196 RALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
R PA+T P+ + + PTA A TP T A TT
Sbjct: 66 RKTPAATTPPTGAPAATTPPTAAPAATTPPTAAPAATT 103
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 171 CRKYYICLEGVAREYGCPIGTVFKIGDADGTGNC 272
C + + C G RE CP GT + A G+C
Sbjct: 31 CVRGHYCPAGTTREIPCPSGTYYPDEGAKAVGDC 64
>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +3
Query: 21 LAYDRESRVCMWADQVPECKNEEVANGFGCPAPGEVSNAGSFSRHAHPEDCR--KYYICL 194
L+Y S VC W+ + A F CP G V AG S H++ R K+ C
Sbjct: 209 LSYTTGSEVCNWSSSY--VNSYLGAMSFTCPGNGFV--AGVHSEHSNSAGDRRFKFKCCS 264
Query: 195 EGVAREYGC 221
+ YGC
Sbjct: 265 RLNVQRYGC 273
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 94 QTDSAAQPPVRSPTLARSAVTLIPKIAV----NITSVSRALPASTVAPSEPFSRSETPTA 261
+T A + + T+A + T+ P+I V + + A P ++VAP E + ET A
Sbjct: 1272 ETTVAPETTIADATVAPKS-TVAPEITVAPETTLAPKTTAEPETSVAP-ETTAPLETTKA 1329
Query: 262 LVTAKTPKTFPDARTTME 315
L T P+T TTME
Sbjct: 1330 LETTVAPETTMAPDTTME 1347
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 202 LPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTM 312
+P +TVAP E ET A T KTP+T TTM
Sbjct: 4280 VPETTVAP-ETTKAPETTVASKTTKTPETTFAPETTM 4315
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 130 PTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
PT A P + VS P +T+AP E + + ALVT K P+T TT
Sbjct: 4613 PTSAMETTAEAPD--TTMAPVSTVAPETTMAP-ETTAAPVSTVALVTTKAPETTKAPETT 4669
Query: 310 M 312
+
Sbjct: 4670 V 4670
>SB_58975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 452 LKGGSVFLVLLWRTGFELLGLVGARLAVSLEPGEELTLADRLQ 324
L+GG + L+ E L LVG L +SL G+ L D LQ
Sbjct: 582 LQGGDLMSNLMEMESGESLTLVGTPLLLSLRKGQRLLFNDDLQ 624
>SB_12699| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
Length = 215
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 157 LIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
L PK N+ R P T PS + TP+ VT+ TP T +TT
Sbjct: 134 LPPKKRCNLDGKKRCTPKVTPIPST----TATPSTAVTSSTPPTSTSMQTT 180
>SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
Length = 511
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 157 LIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
L PK N+ R P T PS + TP+ VT+ TP T +TT
Sbjct: 134 LPPKKRCNLDGKKRCTPKVTPIPST----TATPSTAVTSSTPPTSTSMQTT 180
>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
Length = 312
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +1
Query: 97 TDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAK 276
T S + +P S T++P A +S S ST P+E S P+
Sbjct: 56 THSTSPTVQTTPAFTTSPATILPPTAKTTSSTS-----STSKPTEDVGTSPQPSTENETH 110
Query: 277 TPKTFP 294
TP T+P
Sbjct: 111 TPTTYP 116
>SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)
Length = 346
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 196 RALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
R PA+T P+ + + PTA A TP T A TT
Sbjct: 288 RKTPAATTPPTGSPAATTPPTAAPAATTPPTVAPAATT 325
>SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 214 TVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
T+ +EP SR +PTA ++ P PDA T
Sbjct: 156 TLEVAEPLSREGSPTAEESSAPPTDIPDATLT 187
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Frame = +1
Query: 22 LPTTESPASA-CGLIRFRSAKTKK*-QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVS 195
LP+T+ P + F S K Q +A P + PT + +P + T+VS
Sbjct: 261 LPSTKQPTTPQLTTTTFPSTKQPTTTQQTTATLPSTKQPTTTQQTTATLPTPSTKPTTVS 320
Query: 196 ---RALPASTVAPSEPFSRSETP 255
R P P EP +E P
Sbjct: 321 PTTRQPPPEPTEPLEPTEPTEPP 343
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 153 HAHPEDCRKYYICLEGVAREYGCPIGTVF 239
+A E+C + +C G+A + CP G +F
Sbjct: 466 YAEKENCYGFVLCGGGIAHKKTCPPGLIF 494
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Frame = +3
Query: 57 ADQVPECKNEEVANGFGCPAPGEVSNAGSF----SRHAHPEDCRKYYICLEGVAREYGCP 224
A Q C + G AP AG + ++ A+P DC + C G E CP
Sbjct: 1696 ASQPIPCDPGKFCGHDGLAAPQGNCTAGFYCNGSNKVANPVDCAAGHYCPSGTPIEVPCP 1755
Query: 225 IGT 233
GT
Sbjct: 1756 TGT 1758
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 190 VSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
+S A PAS P ETPTA + + P PDA T
Sbjct: 655 ISPATPASGPPTRTPIPLKETPTAALES-APAAMPDATDT 693
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +1
Query: 94 QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRA---LPASTVAPSEPFSRSETPTAL 264
+T ++A+ V T A L+P V + + A + A T+A + +ET +
Sbjct: 138 ETTASAETTVAPQTTAAPDTALVPDTTVAAETTAAAETTVAAETIAAPDTTVAAETTASA 197
Query: 265 VTAKTPKTFPDARTTM 312
T P+T TTM
Sbjct: 198 ETTVAPETTLAPETTM 213
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 103 SAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVA--PSEPFSRSETPTALVTAK 276
+ A P P SA T P + V V+ ++ AS ++ PS + +++V A
Sbjct: 166 AGASVPTAPPVPVVSA-TFSPSVVVASALVAPSVVASPISSEPSVKLGSTSAASSVVVAA 224
Query: 277 TPKTFPDARTTMENWI*RRSARVSSSP 357
TP T P T + + SA S+P
Sbjct: 225 TPSTSPVPATFVPSLPTVASASTLSAP 251
>SB_23347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 181 ITSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTMENWI 324
+ ++ R+LPA S+P S SETPT + + P PD TT W+
Sbjct: 136 LATLLRSLPADR--RSQPLSYSETPTPALES-APPAMPD--TTGTAWL 178
>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 267 NCEDPEDVPGCEDYYGELDLK-AIRKSELLAGLQADGQPRPNQPKQLKPRPP 419
+C + E V GC +LD+K ++ + LL + Q + N+PKQ+KP P
Sbjct: 689 SCLEGEVVQGC---VLDLDVKKSVVELTLLPDVVKGRQNQKNKPKQMKPGQP 737
>SB_22100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 157 LIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKT 279
L P+ SVS +PASTV S P S P+ ++A T
Sbjct: 467 LAPRAFATAPSVSE-VPASTVPSSSPLRCSPGPSGTISAST 506
>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
Length = 1597
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +1
Query: 136 LARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
L RS T IP + + T +S A+PAS + P E PT + + P PD T
Sbjct: 598 LVRSLET-IPALTLT-TPISPAIPASGPPITTPIPLKEAPTPALES-APAAMPDTTDT 652
>SB_12790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 196 RALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
R PA+T P+ + + PTA A TP T A TT
Sbjct: 66 RKTPAATTPPTVAPAATTPPTAAPAATTPPTGAPAATT 103
>SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)
Length = 1445
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 184 TSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 309
T +S A+PAS P ETPT + + P PDA T
Sbjct: 470 TPISPAIPASGRPIRTPIPLKETPTPALES-APAAMPDATDT 510
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +3
Query: 210 EYGCPIGTVFKIG-DADGTGNCEDPEDVPG-CEDYYGELDLKA-IRKSELL 353
EY C G K DG +CED D PG C G L++ A + KS L
Sbjct: 1197 EYQCVSGACVKWPLTCDGKKDCEDGTDEPGICGVQIGTLNIYALVNKSRSL 1247
>SB_21877| Best HMM Match : TF_Otx (HMM E-Value=3.1)
Length = 154
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 157 LIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKT 279
L P+ SVS +PASTV S P S P+ ++A T
Sbjct: 50 LAPRAFATAPSVSE-VPASTVPSSSPLRCSPGPSGTISAST 89
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = +1
Query: 94 QTDSAAQPPVRSPTLARSAVTLIPKIAV---NITSVSRALPASTVAPSEPFSRSETPTAL 264
+T A + T A T++P+ ++ ++ T A SE ETP A
Sbjct: 2211 ETTVAPETTAALETTAAPVTTMVPETTAAPATTAALETSIVPETTAASETTVAPETPDAP 2270
Query: 265 VTAKTPKTFPDARTTM 312
T P+T TT+
Sbjct: 2271 ATTLAPETTAAPETTV 2286
>SB_4715| Best HMM Match : FlpD (HMM E-Value=1.1)
Length = 705
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 157 LIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKT 279
L P+ SVS +PASTV S P S P+ ++A T
Sbjct: 101 LAPRAFATAPSVSE-VPASTVPSSSPLRCSPGPSGTISAST 140
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 157 LIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKT 279
L P+ SVS +PASTV S P S P+ ++A T
Sbjct: 555 LAPRAFATAPSVSE-VPASTVPSSSPLRCSPGPSGTISAST 594
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,851,796
Number of Sequences: 59808
Number of extensions: 417626
Number of successful extensions: 1497
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -