Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0543
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g46696.1 68414.m05216 hypothetical protein slight similarity ...    29   3.3  
At5g41860.1 68418.m05097 expressed protein                             28   7.6  
At5g23700.1 68418.m02778 hypothetical protein                          28   7.6  
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR...    28   7.6  
At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containi...    28   7.6  
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    28   7.6  
At1g32120.1 68414.m03952 expressed protein contains Pfam profile...    28   7.6  

>At1g46696.1 68414.m05216 hypothetical protein slight similarity to
           maebl (GI:20087019)[Plasmodium falciparum].
          Length = 616

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 196 RALPASTVAPSEPFSRSETPTALVTAKTPKT 288
           R+L  +   PS+  SR ETPT++   K P+T
Sbjct: 211 RSLEKTKYQPSDSGSRPETPTSVSAGKKPET 241


>At5g41860.1 68418.m05097 expressed protein 
          Length = 192

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 97  TDSAAQPPVRS--PTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSR 243
           T S+A+P   S  P+L+ S    +P   VN   ++R  P   +  + PF R
Sbjct: 61  TTSSAEPDPDSTNPSLSESDEVTVPVNFVNFHPINRHFPRRPLTTTAPFKR 111


>At5g23700.1 68418.m02778 hypothetical protein
          Length = 572

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +1

Query: 115 PPVRSP---TLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPK 285
           PP   P   + AR   +  P I  NIT    ++ +S+      FSRS TP A      PK
Sbjct: 87  PPSSGPINGSFARRNRSHSPAIGRNITEQVTSVRSSSTGRPSTFSRSSTPNASPLWMPPK 146


>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 981

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 100 DSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVA-PSEPFSRSETPTALVTAK 276
           D     PV+ P  + S+V+    + V +  V +A+  S +A PS PF + + PT++    
Sbjct: 504 DPRIAAPVQFPMASASSVS----VPVPVQVVQQAIQPSAMAFPSIPFQQPQQPTSIAKHL 559

Query: 277 TP 282
            P
Sbjct: 560 VP 561


>At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 555

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 649 IIKSNFLATCGEYKXINR 596
           II S+FL+ CG+YK I R
Sbjct: 442 IILSSFLSACGQYKDIER 459


>At2g04235.1 68415.m00411 expressed protein weak similarity to
           neurofilament protein (GI:161292) [Loligo pealei]; weak
           similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
           (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
           cerevisiae]
          Length = 1226

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/98 (24%), Positives = 37/98 (37%)
 Frame = +1

Query: 184 TSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTMENWI*RRSARVSSSPGS 363
           T  S  L      P+E  SRS+T +A+V  +  K FP +   ++     R +   S  G 
Sbjct: 208 TPTSSHLLVEEKTPTEVTSRSDTGSAMVLTEPKKLFPKSPVPVDKGSGGRDSNDMSIVGE 267

Query: 364 RXXXXXXXXXXXXXNPVLQRRTKNTLPPFNL*YSRSII 477
                           ++   +K  LP  N   +RS I
Sbjct: 268 NSRRYDYGYLSPTLAALMGDESKELLPEDNTVEARSPI 305


>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 1206

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 184 TSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTMENWI*RRSARVSSSP 357
           +S + +L  S  A   PF + E      ++  PK  PD  +    W+   SAR + SP
Sbjct: 549 SSYAGSLTGSEQATKHPFKKPEWVQR--SSHRPKKSPDRSSDEPEWVETSSARSTKSP 604


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,589,114
Number of Sequences: 28952
Number of extensions: 293774
Number of successful extensions: 836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)