Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0542
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    31   0.12 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   0.48 
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   2.6  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.6  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   4.5  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.0  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   7.9  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   7.9  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = -2

Query: 660 PESIPEWTTSPG*LPPSLRQVLTSPIMKANLKASATFGVAASLSSPRIITTLLPSGV--- 490
           P+S P  + +P  LPP  +    S +  +NL  S         S+P   TT  P GV   
Sbjct: 447 PQSAPALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPLP 506

Query: 489 -MPGNAGV 469
            +PG  G+
Sbjct: 507 PIPGAPGM 514


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +2

Query: 77  NTLRPSASVYVVQTLASDLIFEYREPNE----AKMTLEQPAGEMWQKIREELNENVETRD 244
           +T RP   +Y +  LA  ++F++  P E     K  LE         +R+ +++  E RD
Sbjct: 734 HTERPLEKLYELYDLAK-VLFDFVSPQEYGIEPKEKLEIGLLTSVPLLRQIIHDIKEARD 792

Query: 245 SDLAHIKEWLKKEPHL 292
           SD A  + +  KE H+
Sbjct: 793 SDHASTRMYFTKESHI 808


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +2

Query: 89  PSASVYVVQTLASDLIFEYREPNEAKMTLEQPAGEMWQKIREELNENVETRDSDLAHIKE 268
           PS S+Y  + +  DL+    E   A+++  +      +K++E++NE+ E+  S    I  
Sbjct: 614 PSRSIYFSENVEMDLVKRKEEQLNAQLSQLENLQNEERKLQEKVNEH-ESLLSRTNDILS 672

Query: 269 WLKKE 283
            L+KE
Sbjct: 673 TLRKE 677


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -2

Query: 615 PSLRQVLTSPIMKANLKASATFGVAASLSSPRIITTLLPSGVMPGNAGV*TKLKIS 448
           PSLR ++T  + K+ L+   +   A   +S  ++TTLL +  MPG+  +  +L IS
Sbjct: 331 PSLRVLITDTLCKSLLQLIRSDHTALLTNSLLVMTTLLQA--MPGSLKLQQELFIS 384


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
 Frame = +2

Query: 290 LPDEFDDQR---IMTFLRGCKFS---LEKTKRKLDMYF 385
           LPD+FDD+    I TF  G  FS    E   RK  +YF
Sbjct: 227 LPDDFDDRELSGIFTFCEGYDFSKIESENGHRKAIVYF 264


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 480 YLASLPRAEGWLLCEDSIKMLLHQTLPTLLSW 575
           +L +LP +  WLL   S    + Q +  L+SW
Sbjct: 196 FLEALPSSHQWLLTVMSFWWAIGQVIANLVSW 227


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/35 (22%), Positives = 21/35 (60%)
 Frame = +1

Query: 376 HVLHYEDSCAGIFHES*RQTSRIARNFEFSSNSCI 480
           H++ Y+D    + HE+ + + R+ ++F ++ +  I
Sbjct: 279 HIIKYDDYLVHLVHETLQYSVRLEQHFHYTQDPLI 313


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 398 AVPEFFTNRDVKRPELQEILSLVQTP 475
           A  E  T RD+K PEL +I+  V  P
Sbjct: 24  AAIEAATERDLKLPELGDIIGQVHAP 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,641
Number of Sequences: 5004
Number of extensions: 59414
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)