Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0542
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 33 0.29
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 29 2.7
04_03_1046 + 21974577-21975126,21975620-21975894,21976120-219762... 29 3.5
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 28 6.2
03_02_0438 + 8470290-8470378,8470900-8470990,8471074-8471134,847... 28 8.2
03_02_0240 + 6721981-6722073,6722657-6722727,6723737-6723898,672... 28 8.2
02_05_0695 + 30990070-30990269,30990399-30990459,30990793-309910... 28 8.2
02_03_0214 + 16504237-16504251,16504447-16505055 28 8.2
02_03_0205 - 16411707-16412759,16413077-16413256,16413960-164144... 28 8.2
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 467 QTPALPGITPEGRRVVIMRGLDKDAATPNVADAFKLAFMMGDVXTCRREG 616
+ P + G + + ++R + A PN++DA+ + GD+ C +EG
Sbjct: 159 EVPLILGEWWDADPIQVIREAQRTGAAPNISDAYTINGQPGDLYNCSKEG 208
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 62 AFQSANTLRPSAS-VYVVQTLASDLIFEYREPNEAKMTLEQPAGEMWQKIREELNENVET 238
++ ++ +RP +S + ++ + +D + +E + L AG+ I E + ENVE
Sbjct: 69 SYPPSDVVRPESSLIAAIRVIEADPVLSIQEKARRRQELLGHAGDAGAAITEAVGENVED 128
Query: 239 RDSD 250
+S+
Sbjct: 129 SESN 132
>04_03_1046 +
21974577-21975126,21975620-21975894,21976120-21976284,
21976352-21976441,21977723-21978097
Length = 484
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = +2
Query: 143 YREPNEAKMTLEQPAGEMWQKIREELNENVETRDSDLAHIKEWLKKE 283
+RE +A E+ QK++E++ ++ E R+ ++ +++ L+KE
Sbjct: 425 FRESEKASKEQEKQTEAEIQKLKEKMEKDREEREEEIRRLRDDLEKE 471
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 425 DVKRPELQEILSLVQTPALPGITPEGRRVVIMRGLDKDAATPNV---ADAF 568
D ++ +L +I + P+L I P+G+ V KDA TP V ADAF
Sbjct: 444 DERKQQLSKIFKITGIPSLVAIGPDGKTVT------KDAKTPLVAHGADAF 488
>03_02_0438 +
8470290-8470378,8470900-8470990,8471074-8471134,
8471678-8471755,8471891-8471964,8472689-8472802,
8472881-8472988,8473937-8473975,8474046-8474132
Length = 246
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 176 EQPAGEMWQKIREELNENVETRDSDLAHIKEWLK 277
E+ EMW+K RE + ETRD ++ ++++K
Sbjct: 181 EEETKEMWKKKREHEEKWEETRDQRVSSWRDFMK 214
>03_02_0240 +
6721981-6722073,6722657-6722727,6723737-6723898,
6724529-6724614,6724808-6724810,6725257-6725270
Length = 142
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 571 LKSVGNVWCSSIFI 530
L +VGN WCSSIF+
Sbjct: 58 LSNVGNCWCSSIFM 71
>02_05_0695 +
30990070-30990269,30990399-30990459,30990793-30991001,
30991295-30991382
Length = 185
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 341 KFSLEKTKRKLDMYFTMRTAVPEFFTNRDVKRPELQEILSLVQTPALPGITP 496
+FS +++ F ++++VP F D R +LQ + +LP P
Sbjct: 16 RFSSATLQKETRPVFPLQSSVPNIFYGTDTSRQQLQFLTKTPSPSSLPSSLP 67
>02_03_0214 + 16504237-16504251,16504447-16505055
Length = 207
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 248 DLAHIKEWLKKEPHLPDEFDDQRIMT 325
D++ I+EW +PHLP E + + I+T
Sbjct: 128 DVSSIEEWSLIKPHLPSETNTKIIVT 153
>02_03_0205 -
16411707-16412759,16413077-16413256,16413960-16414498,
16414798-16414825
Length = 599
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 248 DLAHIKEWLKKEPHLPDEFDDQRIMT 325
D+ I+EW +PHLP+E + + I+T
Sbjct: 129 DVLSIEEWSLIQPHLPNETNTKIIVT 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,136,571
Number of Sequences: 37544
Number of extensions: 415068
Number of successful extensions: 1231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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