Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0542
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50201| Best HMM Match : BCNT (HMM E-Value=9.8)                      34   0.13 
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_56495| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)                 31   1.2  
SB_47114| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0)                29   3.6  
SB_59641| Best HMM Match : PAE (HMM E-Value=0)                         29   3.6  
SB_46506| Best HMM Match : DUF827 (HMM E-Value=6.9)                    29   3.6  
SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7)             29   4.8  
SB_945| Best HMM Match : RecR (HMM E-Value=0.52)                       28   6.3  
SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16)                 28   8.4  
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_50201| Best HMM Match : BCNT (HMM E-Value=9.8)
          Length = 254

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 251 GRSLWSPRFRSAPRGSSATFHRLAAPESSWLRL 153
           G + W P  +SAP   S TF+R ++   +WLRL
Sbjct: 105 GSTSWGPSGKSAPEEGSRTFNRSSSSFKAWLRL 137


>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1805

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = +2

Query: 149  EPNEAKMTLEQPAGEMWQKIREELNENVETRDSDLAHIKEWLKKEPHLPDEFDDQR 316
            E  +AK +LEQ   EM Q + EEL + ++ ++  L  +K++ ++   +  + DD R
Sbjct: 1427 ELEKAKRSLEQQLAEMKQTM-EELEDELQVKEDGLRQLKKYQQQLKDIQRDLDDAR 1481


>SB_56495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 23/79 (29%), Positives = 33/79 (41%)
 Frame = +2

Query: 122 ASDLIFEYREPNEAKMTLEQPAGEMWQKIREELNENVETRDSDLAHIKEWLKKEPHLPDE 301
           A  L  E  +    + T +  A ++ +K ++   EN   R SDLA       K   LPDE
Sbjct: 109 ALKLFMEMNQKLFDECTQQYKAEKLKEKEKQRERENAWERISDLARKNPEYGKVASLPDE 168

Query: 302 FDDQRIMTFLRGCKFSLEK 358
              +R M        +LEK
Sbjct: 169 ITLEREMDIAEDANINLEK 187


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 149  EPNEAKMTLEQPAGEMWQKIREELNENVETRDSDLAHIKEWLKK-EPHL 292
            EPN A++T+EQPA    QK+R  + + VE  D+ + +IK   +  EP L
Sbjct: 2506 EPN-ARITIEQPANTSRQKVRLVIKQ-VERGDTGMYYIKIGARSYEPRL 2552


>SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
 Frame = +2

Query: 167 MTLEQPAGEMWQKIREELNENVETRDSDLAH-IKEWLKKEPHLPDEFDDQ--RIMTFLRG 337
           M  E+  G+  ++IR+E  E  E R +   H IKE L  + H   + +++  ++   +  
Sbjct: 103 MVYEETKGKDEEEIRDE-EEKAEMRRNFEEHLIKEGLLLQ-HTDSDLNEEVNKVFVLIHA 160

Query: 338 CKFSLEKTKRKLDMYFTMRTAVPEFFTNRDVKRPELQEILSLVQTPALPGITPEGRRVVI 517
               L +   K+ + F +R A P        K PEL    S +  P   GIT E R V  
Sbjct: 161 PWDVLTRFAEKMLLRFPLREASPPPAAQGFDKIPELISNWSKIFDPPSCGITKEKRFVHG 220

Query: 518 MRGLDK 535
           +   DK
Sbjct: 221 LFSRDK 226


>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
          Length = 459

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -2

Query: 198 HISPAGCSRVILASFGSLYSNIKSLA 121
           H+S AGC  V L+S+ SL  N+KSL+
Sbjct: 192 HLSLAGCKEVHLSSWQSLGKNLKSLS 217


>SB_47114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 20  VIFKYFIPKNISYCAFQSANTLRPSASVYVVQTLASDLIFEYREPNEAKMTLEQPAGEMW 199
           V++KY  P N+   A ++    +PS SVY++  +   +I+  R  N AK  +     E W
Sbjct: 255 VLYKYLNP-NLIAIATEAVTDGKPSTSVYLIDAVTGMIIYTNRHKN-AKGPVHLVHSENW 312


>SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0)
          Length = 375

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 140 EYREPNEAKMTLEQPA-GEMWQKIREELNENVETRDSDLAHIKEWLKKEPHLPDE 301
           EYRE  E +   E+   GE  +K +EE  E+ E  + D     +W K  P +P E
Sbjct: 57  EYREGEEEEEEEEEEGEGEEEEKEKEENEEDEEVAEEDDTPKSDW-KPPPVIPKE 110


>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
          Length = 1252

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 188 GEMWQKIREEL-NENVETRDSDLAHIKEWLKKEPHLPDEFDDQRIMTFLRG 337
           G+++ +  +EL N ++  ++  L     + +  P LP+EF+++ I  +++G
Sbjct: 268 GQLYDRFHQELVNSSLYDKNCKLWAFMSFTRYNPPLPEEFNEKDIPMYVKG 318


>SB_46506| Best HMM Match : DUF827 (HMM E-Value=6.9)
          Length = 261

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
 Frame = +2

Query: 17  VVIFKYFIPKNISYCAFQSANTLR-PSASVYVVQTLASDLIFEYREPNEAKMTLEQPAGE 193
           VV+   F+P       F  A   + P  +  +++     L    R   E  + LE     
Sbjct: 117 VVMPDIFLPTWRILLDFSQAKYFKMPEPTENILKERVQKLERLLRAREERIVALETENAM 176

Query: 194 MWQKIREELNENVETRDSDLAHIKE----WLKKEPHLPDEFDDQRIMTFLRGCKFSLEKT 361
           ++ K+ EEL EN+ +  S +A + E    +++K      +F  +  MT +   +  L +T
Sbjct: 177 LYLKLAEELKENLNSLKSVVAQMPEELSTYVEKAKFKTTKFGSEE-MTNMEKMQSKLMET 235

Query: 362 KRKLDM 379
           + +LDM
Sbjct: 236 EMQLDM 241


>SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7)
          Length = 434

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/115 (20%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
 Frame = +2

Query: 143 YREPNEAKMTLEQPAGEMWQKIREELNENVETRDSDLAHIK-------EWLKKEPHLPDE 301
           Y E  + K+ +++   +++++   E+   +E + +   +IK       EW  +E  L +E
Sbjct: 138 YEEFLKEKLMIDEIVRKIYEEDEREIANRLEKQRATQRYIKEFKTKRDEWKAREQELMEE 197

Query: 302 FDDQRIMTFLR----GCKFSLEKTKRKLDMYFTMRTAVPEFFTNRDVKRPELQEI 454
            +++RI+ F R      +  +EK K + +   T++  + E     + +R E++ I
Sbjct: 198 -ENRRILEFARLQQQREEERMEKKKEQEEAMATVQQKLSERIRKEEEERDEMERI 251


>SB_945| Best HMM Match : RecR (HMM E-Value=0.52)
          Length = 279

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 182 PAGEMWQKIREELNENVETRDSDLAHIKEWLKKEPHLPDEF 304
           P     Q++ + LNE+ + +DS    +  W    P LPD +
Sbjct: 161 PYSRSEQRVLDVLNESCKRKDSGYKLVLLWKPNRPLLPDNY 201


>SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16)
          Length = 807

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +2

Query: 116 TLASDLIFEYREPN--EAKMTLEQPAGEMWQ--KIREELNENVETRDSDLAHIKEWLKKE 283
           TL+S   F  R+    E   T E PA +M +  K+ E+    +   DSD++ +KE + +E
Sbjct: 102 TLSSLWYFRNRKEKKKEKSETQEAPAYKMSEDKKVAEKRELFIWKFDSDVSLLKEVIAEE 161

Query: 284 PH 289
           PH
Sbjct: 162 PH 163


>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = +2

Query: 29  KYFIPKNISYCAFQSANTLRPSASVYVVQTLASDLIFEYREP------NEAKMTLEQPAG 190
           K F  +++S C     +T R SAS Y   TLA + I + R P      NE K +L Q   
Sbjct: 35  KSFSLQHVSCCIH--THTERDSASYYTAFTLALNRIHQARPPTKIFLQNELKSSLFQTNS 92

Query: 191 EMWQKIREELNENV 232
            ++++++    + +
Sbjct: 93  RLYEEMKHPTQDGM 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,592,673
Number of Sequences: 59808
Number of extensions: 455212
Number of successful extensions: 1470
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)