Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0542
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           25   3.0  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   3.0  
DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide...    24   5.3  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    24   5.3  

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 608 REGGSXPGDVVHSGMLSGXQLPTXLRQXHTQ 700
           RE G  PGD VH            LRQ H Q
Sbjct: 619 REAGRTPGDAVHKIYPGACIKVFDLRQCHLQ 649


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 149 EPNEAKMTLEQPAGEMWQKIREELNENVETRDSDLAHIKE 268
           E N  K  L Q + +  ++  EELN+ +ET    +   +E
Sbjct: 723 ELNNLKQRLAQTSFQQTKEEIEELNKKIETLQKTIVEARE 762


>DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide F
           receptor protein.
          Length = 575

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 23/87 (26%), Positives = 40/87 (45%)
 Frame = -2

Query: 660 PESIPEWTTSPG*LPPSLRQVLTSPIMKANLKASATFGVAASLSSPRIITTLLPSGVMPG 481
           P S+P   T  G + PS++   T  +    L+      +  S+ +P    T   + + P 
Sbjct: 482 PLSLPPPLT--GAMLPSVQSAETVILPSGVLETPFDVQLIPSVGAPVSNGTSDATNLTP- 538

Query: 480 NAGV*TKLKISCNSGRLTSRFVKNSGT 400
           +AGV   L  +C + +L+S  + N GT
Sbjct: 539 SAGVRNGLNHACTNPKLSSLILINDGT 565


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 237 PETPTSPTSRSG 272
           P+TPTSPT  SG
Sbjct: 371 PKTPTSPTGPSG 382


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,843
Number of Sequences: 2352
Number of extensions: 14259
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)