Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0542
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    30   1.8  
U53181-9|AAA93488.2|  143|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U23139-11|AAK31490.1|  328|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.        27   9.8  
U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.        27   9.8  
AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell...    27   9.8  

>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/86 (27%), Positives = 34/86 (39%)
 Frame = -2

Query: 648 PEWTTSPG*LPPSLRQVLTSPIMKANLKASATFGVAASLSSPRIITTLLPSGVMPGNAGV 469
           P  T  P  +  S     TSPI      +S+      S  +P   TTLL S + P   GV
Sbjct: 345 PTSTGIPSTVSTSQGTSSTSPIPSTTQTSSSAPSTYTSNFTPSPTTTLLTSTIAPSTQGV 404

Query: 468 *TKLKISCNSGRLTSRFVKNSGTAVL 391
            T  K S  +   T+     + ++ L
Sbjct: 405 PTSSKSSSPNSTPTTTITPGAPSSTL 430


>U53181-9|AAA93488.2|  143|Caenorhabditis elegans Hypothetical
           protein F36D4.1 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 215 ELNENVETRDSDLAHIKEWLKKEPHLPDEFDDQRIMTFLRGCKFSLEKTKRKLD 376
           EL +NV      L  + + LKK  HL  E   + IMT +   K  +   +  LD
Sbjct: 67  ELRDNVTNLHMQLVPVIDTLKKVSHLSSEKTKKEIMTLIEEYKTLVVVCENMLD 120


>U23139-11|AAK31490.1|  328|Caenorhabditis elegans Hypothetical
           protein F13H8.9 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 179 QPAGEMWQKIREELNENVETRDSDLA 256
           QP  E++Q IRE+L  NV    SD+A
Sbjct: 105 QPVSEIFQAIREKLKTNVPFLHSDVA 130


>Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical
           protein ZK858.1 protein.
          Length = 841

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/65 (36%), Positives = 31/65 (47%)
 Frame = +2

Query: 113 QTLASDLIFEYREPNEAKMTLEQPAGEMWQKIREELNENVETRDSDLAHIKEWLKKEPHL 292
           QTLA  L  +  E  EAK +LE+       K  EEL   V TR++D+    E  + E H 
Sbjct: 439 QTLAQQLKKQILEQTEAKKSLEKMPACDDNKKEEEL---VATRETDVELEAEDTESEGHH 495

Query: 293 PDEFD 307
             E D
Sbjct: 496 NGEND 500


>U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -2

Query: 666 CXPESIPEWTTSPG*LPPSLRQVLTSPIMKAN---LKASATFGVAASLSSPRII 514
           C   S+   TTS    PP   Q  T   MK N   L A++ F +  S+SSP ++
Sbjct: 254 CRKRSLSPSTTSSTTAPPPPPQPPTKKGMKPNPLNLTATSNFSLQPSISSPLLM 307


>U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -2

Query: 666 CXPESIPEWTTSPG*LPPSLRQVLTSPIMKAN---LKASATFGVAASLSSPRII 514
           C   S+   TTS    PP   Q  T   MK N   L A++ F +  S+SSP ++
Sbjct: 254 CRKRSLSPSTTSSTTAPPPPPQPPTKKGMKPNPLNLTATSNFSLQPSISSPLLM 307


>AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell
           lineage protein 1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -2

Query: 666 CXPESIPEWTTSPG*LPPSLRQVLTSPIMKAN---LKASATFGVAASLSSPRII 514
           C   S+   TTS    PP   Q  T   MK N   L A++ F +  S+SSP ++
Sbjct: 254 CRKRSLSPSTTSSTTAPPPPPQPPTKKGMKPNPLNLTATSNFSLQPSISSPLLM 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,905,470
Number of Sequences: 27780
Number of extensions: 337561
Number of successful extensions: 1056
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)