Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0542
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.52 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.4  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 376 VQLALGLLQGELTTSEE 326
           V LALG L GELT S+E
Sbjct: 444 VPLALGFLAGELTYSQE 460


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 3   AVLTKSLFSNTLFQKIYRIVP-FNLQTRCVQ 92
           AVLT+    + +F  +Y I+P  +L +R +Q
Sbjct: 143 AVLTRQDTQSVIFPPVYEILPQHHLDSRVIQ 173


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 355 EDQAQAGHVLHYEDSCAGIFHES*RQTSRIARNF 456
           E++ + G  LHY     G  + +  Q   +AR+F
Sbjct: 122 ENETRQGLTLHYRSKRRGFVYYTMGQIREVARHF 155


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 30  NTLFQKIYRIVPFNLQTRCVQVPVY 104
           N  ++K+Y+    N++   V VPVY
Sbjct: 110 NNNYKKLYKNYIINIEQIPVPVPVY 134


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 30  NTLFQKIYRIVPFNLQTRCVQVPVY 104
           N  ++K+Y+    N++   V VPVY
Sbjct: 110 NNNYKKLYKNYIINIEQIPVPVPVY 134


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 336 PRRKVMMRWSSNSSGRCGS 280
           P+      W+ N +G CGS
Sbjct: 107 PKLTPYPNWAQNKAGACGS 125


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 188 GEMWQKIREELNE 226
           GEM +KI  ELNE
Sbjct: 89  GEMAEKISNELNE 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,033
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)