Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0541
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   152   2e-38
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   147   5e-37
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.34 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   3.2  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   3.2  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   4.2  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    24   9.7  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    24   9.7  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  152 bits (369), Expect = 2e-38
 Identities = 72/114 (63%), Positives = 89/114 (78%), Gaps = 3/114 (2%)
 Frame = +1

Query: 10  KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQ 189
           KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+V  AA+RD+++ASVY  + 
Sbjct: 4   KRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYT 63

Query: 190 LPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 342
           +PKLY KL YCVSCAIHS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 64  IPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  147 bits (357), Expect = 5e-37
 Identities = 69/114 (60%), Positives = 88/114 (77%), Gaps = 3/114 (2%)
 Frame = +1

Query: 10  KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQ 189
           KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+V  AA+RD+++ASVY  + 
Sbjct: 4   KRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYA 63

Query: 190 LPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 342
           +PK+Y KL YCVSCAIH++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 64  IPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 82  RCVPKDKAIKKFVIRNIVXAAAVRDI 159
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -3

Query: 141 RXYDVPNHELFDGLVLWHAPRAVCASHGFNVTTSMLGASS 22
           + +DV + +L + + L   P+A+C  +  ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 248 LSGTDRRKTEESVLLPRVTSLGT 316
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 220 CVSCAIHSKVVRNRSKKDRRIRTPPKS 300
           C SC+   K   N+  + RR++  PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 280 IRTPPKSNFPRDMSR 324
           IRTP KS FP+D ++
Sbjct: 157 IRTPKKSYFPKDHAK 171


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = +3

Query: 216 LLRVMRHPQQSCQEQIEERQKNPYSSQ 296
           +  ++ HP++  Q+Q+E+ Q+  +S +
Sbjct: 421 IFNLLFHPEEVQQQQLEQMQQQQFSPE 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,155
Number of Sequences: 5004
Number of extensions: 21934
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)