Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0541
         (392 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             180   3e-46
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                35   0.020
SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   5.4  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   27   7.2  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  180 bits (439), Expect = 3e-46
 Identities = 82/95 (86%), Positives = 88/95 (92%)
 Frame = +1

Query: 10  KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQ 189
           KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIV AAAVRDI DASVY ++ 
Sbjct: 4   KRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYEVYA 63

Query: 190 LPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 294
           LPKLY KLHYCVSCAIHSKVVRNRSK+DR+IRTPP
Sbjct: 64  LPKLYVKLHYCVSCAIHSKVVRNRSKEDRKIRTPP 98


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 35.1 bits (77), Expect = 0.020
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +1

Query: 76  CAR-CVPKDKAIKKFVIRNIVXAAAVRD--INDASVYPMFQLPKLYAKLHYC--VS--CA 234
           C R C+ +D+ I  FVI     AAAVRD  + D ++Y      +       C  VS  C 
Sbjct: 664 CERDCIMRDRTICDFVICG--RAAAVRDCIMRDRAIYNCVMSDRFIRDCVMCDRVSRDCL 721

Query: 235 IHSKVVRNRSKKDRRIR 285
           IH +VVR+   +DR IR
Sbjct: 722 IHDRVVRDCVMRDRVIR 738


>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 842

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 88  VPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQLPKL 201
           + K K  +  VI   + A AV D++  +VYP+F  P L
Sbjct: 47  IVKKKRNEGKVIYLFIGALAVTDVSLLAVYPLFAFPVL 84


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +1

Query: 4    LVKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVXAAAVRDINDASVYP 180
            L ++ N    K+ R     +  TNC      +K   K   +NI+   +  D  D+S+YP
Sbjct: 1820 LYRQNNWYYIKNSRNTEGFIPFTNCIAEDEYEKRQNKLSRQNIIRNTSFLDSMDSSIYP 1878


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,684,872
Number of Sequences: 59808
Number of extensions: 190129
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)