Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0541
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   156   6e-39
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    29   1.2  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical ...    27   6.3  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  156 bits (378), Expect = 6e-39
 Identities = 70/95 (73%), Positives = 77/95 (81%)
 Frame = +1

Query: 10  KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQ 189
           KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIV AAAVRDI DAS Y  + 
Sbjct: 4   KRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYA 63

Query: 190 LPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 294
           LPKLY KLHYC++CAIHSKVVRNRS++ RR R PP
Sbjct: 64  LPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPP 98


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +1

Query: 49  HVKAVRCTNCARCVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQL-PKLYAKLHYCV 225
           H+K ++C NC+     +K+++  +IR+    A   ++  A      +L P    K H   
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 226 SCAIHSKVV-RNRSKKDRRIRTPPKS 300
            C    K++ + R  K  ++++ P S
Sbjct: 140 -CKNREKIIEKQRVSKILKVQSLPSS 164


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +1

Query: 49  HVKAVRCTNCARCVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQL-PKLYAKLHYCV 225
           H+K ++C NC+     +K+++  +IR+    A   ++  A      +L P    K H   
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 226 SCAIHSKVV-RNRSKKDRRIRTPPKS 300
            C    K++ + R  K  ++++ P S
Sbjct: 258 -CKNREKIIEKQRVSKILKVQSLPSS 282


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 216 LLRVMRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 341
           ++ V + P +S   ++ + QKN Y+S E    GH TS+ +A+
Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411


>Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.2 protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +1

Query: 127 NIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNF 306
           N++    +RD N   +   ++L  +   L YC+   +++  V NR      ++T  KS  
Sbjct: 82  NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANRC-----VKTYLKSKD 136

Query: 307 PRDMSR 324
            R++ R
Sbjct: 137 TRELKR 142


>AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical
           protein F29A7.1 protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 52  VKAVRCTNCARCVPKDKAIKKFVIRNIVXAAAVRDINDASV 174
           V   R  N   C+   K IK+F ++ I  AA  R + +  V
Sbjct: 129 VSVYRTMNEGNCINASKVIKEFRVKTIRLAACSRSLEEKIV 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,593,651
Number of Sequences: 27780
Number of extensions: 134189
Number of successful extensions: 347
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)