Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0540
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413...    29   3.0  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    29   3.9  
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969...    29   5.2  
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376     28   6.9  

>02_01_0562 +
           4129852-4130235,4130355-4130453,4131046-4131146,
           4131229-4131300,4131712-4131802,4132005-4132085,
           4132263-4132331,4132634-4132690,4132776-4132898,
           4133000-4133038,4133255-4133380
          Length = 413

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 481 FANIPRHNYVYLASILYISPF*LFCKTNFSFHISHRLPFELQKR 612
           FA   RH  + LA  LY + F L+CK      +  R+P  + KR
Sbjct: 251 FAVTRRHALLILADHLYYNKFELYCKPVTGITVGTRVPGFIPKR 294


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +2

Query: 35  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTF 214
           S+K   V +K K+   +N         + L   +    +  T +L+K+ DEY + ++S  
Sbjct: 444 SLKATVVAEKEKILQEQN--------NLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSLS 495

Query: 215 KTTEMKFKPGEEFEED 262
           + TE   K  ++FEE+
Sbjct: 496 EETEDLRKQRQKFEEE 511


>11_03_0084 +
           9696368-9696554,9696648-9696718,9696821-9696901,
           9697139-9697206,9697335-9697437,9700422-9700567,
           9700686-9700803,9701693-9701797,9702333-9702434,
           9702518-9702655,9703475-9703603,9703682-9703762,
           9703883-9703957,9704861-9705028,9705125-9705242,
           9705345-9705409,9705547-9705637,9705801-9705885,
           9706006-9706084,9706317-9706414,9707029-9707137,
           9707224-9707292,9707770-9707835,9707952-9708041,
           9708416-9708526
          Length = 850

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 371 GPEEMKAVMTAKDVTCTRVYKVQ*KDSTPRSGVGAADSRTS 493
           G + ++  M AKD T  +V +V  KD    S VG ADS+ +
Sbjct: 159 GMDVVEMAMWAKDNTTVKVTQVSTKDGPIESLVGEADSQVA 199


>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
          Length = 1135

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 417 APESTRSSKRTLLRGRESVPPIREHPAAQLCLFSIYSIH 533
           AP +TR  +    + +E+  P RE PA + C     S+H
Sbjct: 77  APRATRKGRPASDKKKEAGTPARERPAGKWCSVHNTSLH 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,218,935
Number of Sequences: 37544
Number of extensions: 391761
Number of successful extensions: 991
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)