Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0540
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...   160   1e-41
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    71   2e-14
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    56   4e-10
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    26   0.43 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.0  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   5.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   5.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   5.3  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score =  160 bits (388), Expect = 1e-41
 Identities = 75/131 (57%), Positives = 96/131 (73%)
 Frame = +2

Query: 47  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 226
           +F+GK+YK+ SSENFD+FMK +GVG++TRK  ++V+P VEL ++   Y L T+S FK TE
Sbjct: 3   DFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTE 62

Query: 227 MKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAK 406
           +KFK GEEFEE+  DG KVKSVCT +GN L QVQK     + T  REF   EMKA+M   
Sbjct: 63  IKFKLGEEFEEETVDGRKVKSVCTLDGNKLIQVQKGEK--QTTIEREFSSTEMKAIMKVD 120

Query: 407 DVTCTRVYKVQ 439
           D+ CTRVYK+Q
Sbjct: 121 DIICTRVYKIQ 131


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 70.5 bits (165), Expect = 2e-14
 Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
 Frame = +2

Query: 44  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 223
           ++F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T 
Sbjct: 2   VQFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTY 59

Query: 224 EMKFKPGEEFEE--DRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKA-V 394
              FK    FEE        K ++V + EGNT K   +  D L+VT + EF   E+   +
Sbjct: 60  TKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVTRLYEFSDNELLVHI 119

Query: 395 MTAK-DVTCTRVYK 433
            T K DV  TRVYK
Sbjct: 120 STNKSDVKATRVYK 133


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 56.0 bits (129), Expect = 4e-10
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
 Frame = +2

Query: 47  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 226
           +F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T  
Sbjct: 1   QFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTYT 58

Query: 227 MKFKPGEEFEE--DRADGAKVKSVCTFEGNTLKQVQKAPDGLEVT 355
             FK    FEE        K ++V + EGNT K   +  D L+VT
Sbjct: 59  KTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVT 103


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -3

Query: 493 GCSRIGGTDSRPRSRVLLLDLVDSGASHVLSCHHSFHLLRAEFPDVSDFKTV 338
           GC          RSR+  L   D G S   S   +  L+R E  D  D +T+
Sbjct: 13  GCDEQTSRGDNDRSRIARLGRDDGGKSRQSSFEVTSLLMREETEDAEDTQTL 64


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 231 FISVVLKVEEVTKLYSSPSLRSSTV 157
           FIS+++  +E+  + +SP L + T+
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTL 33


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 293 CTFEGNTLKQVQKAPDGL 346
           CT EGN LK+V   PD L
Sbjct: 57  CTAEGNELKRV--LPDAL 72


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 293 CTFEGNTLKQVQKAPDGL 346
           CT EGN LK+V   PD L
Sbjct: 57  CTAEGNELKRV--LPDAL 72


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 293 CTFEGNTLKQVQKAPDGL 346
           CT EGN LK+V   PD L
Sbjct: 57  CTAEGNELKRV--LPDAL 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,155
Number of Sequences: 438
Number of extensions: 3751
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)