Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0540
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r...    28   5.8  
At5g38720.1 68418.m04683 expressed protein predicted protein, Dr...    28   5.8  
At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein ...    28   5.8  
At4g07452.1 68417.m01144 hypothetical protein                          28   7.6  

>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = +3

Query: 300 SKAIPSSKSRRPPTVLKSLTSGNSALRR*KL**QLRT*LAPESTRSSKRTLLRG 461
           SK  P SK RR  +  K  TS +S+L +  +  +    L PEST SS RT+  G
Sbjct: 736 SKEKPQSKKRRDRSKKKPSTSISSSLDK-TVEHKPSVNLKPESTSSSLRTIEEG 788


>At5g38720.1 68418.m04683 expressed protein predicted protein,
           Drosophila melanogaster
          Length = 306

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 116 VGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADG 274
           VG   ++  N     VEL +D     L   S+ K    K + G+E +   ADG
Sbjct: 18  VGKKIQRKKNEKVSNVELSEDPQAAQLQAKSSEKPNRKKIQKGKEIKSSPADG 70


>At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 238

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 580 SHRLPFELQKRVGGDETKISLATTVTTAG 666
           SHR  F L +  GGDE  +S ++ +TT+G
Sbjct: 110 SHRKSFSLTQSAGGDE--LSTSSAITTSG 136


>At4g07452.1 68417.m01144 hypothetical protein
          Length = 231

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 565 FSFHISHRLPFELQKRVGGDET 630
           F  H + R+PFE  KRV  DET
Sbjct: 115 FGLHPNSRIPFESAKRVFDDET 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,158,609
Number of Sequences: 28952
Number of extensions: 304376
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)