Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0538
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    55   1e-08
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    48   1e-06

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
 Frame = +1

Query: 7   RTVTKSVQADSFFNFFNPPTLP-EDPNSTVASDVQALLTADFEIGHYIRERVVSRAV 174
           R V  SV  DSFFNFFNPPT P E+   + + ++  LL  D++IG   +E+++ RAV
Sbjct: 275 RVVKVSVPRDSFFNFFNPPTPPSEEDEESESPELDELLELDYQIGEDFKEKLIPRAV 331


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 20/56 (35%), Positives = 33/56 (58%)
 Frame = +1

Query: 7   RTVTKSVQADSFFNFFNPPTLPEDPNSTVASDVQALLTADFEIGHYIRERVVSRAV 174
           R V  +V  DSFFNFF+PP L +D +     D   LL  D+++G   +++++  A+
Sbjct: 280 RLVRTTVPNDSFFNFFSPPQLDDDESDDGLDDKTELLELDYQLGEVFKDQIIPLAI 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,670
Number of Sequences: 5004
Number of extensions: 43316
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)