Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0538
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255...    50   1e-06
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071...    50   2e-06
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031...    50   2e-06
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746...    49   5e-06
05_03_0077 + 8200529-8200541,8200658-8200701,8200793-8200888,820...    38   0.006
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51...    32   0.56 

>06_01_0356 +
           2557127-2557193,2557272-2557315,2557433-2557528,
           2559259-2559351,2559450-2559540,2559617-2559678,
           2559754-2559938,2560022-2560199,2560293-2560336,
           2560440-2560635,2560728-2560745,2560955-2561005
          Length = 374

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   SVRTVTKSVQADSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRA 171
           + + +TK+   +SFFNFF+PP +P   ED +   A ++Q  +  D++IG  IR++++  A
Sbjct: 239 NAKPITKTEVCESFFNFFSPPQVPDDDEDIDEDTADELQGQMEHDYDIGTTIRDKIIPHA 298

Query: 172 V 174
           V
Sbjct: 299 V 299


>06_03_0740 -
           24006485-24006629,24006821-24006864,24006954-24007122,
           24007226-24007413,24007572-24007634,24007992-24008084,
           24009837-24009932,24010024-24010067,24010184-24010357,
           24010764-24010974
          Length = 408

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   SVRTVTKSVQADSFFNFFNPPTLPEDP---NSTVASDVQALLTADFEIGHYIRERVVSRA 171
           S + +TK+ + +SFFNFF+PP +P+D    +   A ++Q  +  D++I   +R++++  A
Sbjct: 313 STKPITKTEECESFFNFFSPPQVPDDDAKIDENTAEELQNQMERDYDIASTLRDKIIPHA 372

Query: 172 V 174
           V
Sbjct: 373 V 373


>05_06_0234 -
           26602660-26602728,26602814-26602988,26603077-26603120,
           26603204-26603381,26603468-26603652,26603737-26603801,
           26603985-26604066,26604342-26604434,26605096-26605191,
           26605312-26605355,26605467-26605530
          Length = 364

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   SVRTVTKSVQADSFFNFFNPPTLPEDP---NSTVASDVQALLTADFEIGHYIRERVVSRA 171
           + + +TK+   +SFFNFF+PP +P+D    +   A  +Q  +  D++IG  IR++++  A
Sbjct: 236 NTKPITKTENCESFFNFFSPPQVPDDDEEIDEDTAEQLQNQMEQDYDIGSTIRDKIIPHA 295

Query: 172 V 174
           V
Sbjct: 296 V 296


>01_06_0465 -
           29573972-29574110,29574300-29574343,29574434-29574602,
           29574707-29574894,29575081-29575145,29575257-29575311,
           29575502-29575594,29576035-29576130,29576259-29576302,
           29576419-29576431
          Length = 301

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   SVRTVTKSVQADSFFNFFNPPTLPEDP---NSTVASDVQALLTADFEIGHYIRERVVSRA 171
           S + +TK+ + +SFFNFF+PP +PED    +   A ++Q  +  D++I   +R++++   
Sbjct: 208 STKPITKTEEYESFFNFFSPPQVPEDDAKIDENTAEELQNQMERDYDIASTLRDKIIPHV 267

Query: 172 V 174
           V
Sbjct: 268 V 268


>05_03_0077 +
           8200529-8200541,8200658-8200701,8200793-8200888,
           8201585-8201639,8201753-8201817,8202309-8202434,
           8202742-8202903
          Length = 186

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = +1

Query: 1   SVRTVTKSVQADSFFNFFNPPTLPED 78
           S + +TK+ + +SFFNFF+PP +P+D
Sbjct: 100 STKPITKTEECESFFNFFSPPQVPDD 125


>07_01_0070 +
           515247-515397,516198-516265,516360-518456,518750-518900,
           519883-520638,520990-521164,521303-521387
          Length = 1160

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 1   SVRTVTKSVQADSFFNFFNPP-TLPEDPNSTVASDVQALLTAD 126
           S+RT TK  + D  FN  +PP  L E PNS +    +  +  D
Sbjct: 186 SIRTFTKEAEKDHLFNCGDPPRILNEPPNSAIQEKNKGTMDID 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,575,295
Number of Sequences: 37544
Number of extensions: 269007
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)