Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0538
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              29   3.0  
SB_40372| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_27430| Best HMM Match : MORN (HMM E-Value=1.3)                      29   5.3  
SB_41562| Best HMM Match : DUF131 (HMM E-Value=2.7)                    28   9.3  
SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)               28   9.3  

>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 458

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 343 LDRLYLLQQIT*EPLNKRTRHRCAASCRDHIWLIS 447
           LD++YLL +    PL KRT +R    C D ++L+S
Sbjct: 4   LDQVYLLPEKAMSPLTKRTYYR-KKRCPDLVYLLS 37


>SB_40372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 632 YTLRRHRSLLAVCSFGIDLISISKTYLSNQRINHA 528
           Y L +HR+++  C+F  D  ++SK+ +  Q  N +
Sbjct: 59  YVLNKHRNVIQTCAFSHDSKTVSKSEIRAQIANRS 93


>SB_27430| Best HMM Match : MORN (HMM E-Value=1.3)
          Length = 183

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 10  TVTKSVQADSFFNFFNPPTLPEDPNSTVASDV-QALLTAD 126
           T   +V    F N+F P    ++ NS  ASDV  A+L  D
Sbjct: 1   TAVSNVSRHGFVNYFGPQRFGQEDNSVNASDVGLAMLQGD 40


>SB_41562| Best HMM Match : DUF131 (HMM E-Value=2.7)
          Length = 332

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 43  FNFFNPPTLP--EDPNSTVASDVQALL 117
           FN+F PP LP  +   +T++++VQ L+
Sbjct: 152 FNYFKPPELPTFDSKTNTISTEVQNLM 178


>SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
          Length = 291

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 304 PP--SLL*ASEAFVRLDRLYLLQQIT*EPLNKRTRHR 408
           PP  S+L   +  V LD++YLL + T  PLNK T +R
Sbjct: 142 PPLTSVLTTGKDDVPLDQVYLLPEKTISPLNKCTYYR 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,475,248
Number of Sequences: 59808
Number of extensions: 326663
Number of successful extensions: 695
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)