Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0538
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    50   1e-06
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    29   2.7  
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
 Frame = +1

Query: 13  VTKSVQADSFFNFFNPPTLPEDPNSTVASD-VQALLTADFEIGHYIRERVVSRAV 174
           +TK+V+ADSFFNFF PP   ++ N     +  +  L  D+E+G  IR+ ++ RAV
Sbjct: 231 LTKTVKADSFFNFFEPPKSKDERNEDEDDEQAEEFLELDYEMGQAIRDTIIPRAV 285


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +2

Query: 113 C*LRTLRSVTTSASASCLVPCCSTPARD-SXXXXXXXXXXXXXXXLTKTPVPRKFPTWRI 289
           C  RT  + TT+ + + L PC  TPA   +                TKT VP+++ T   
Sbjct: 211 CTPRTTTTTTTTTTTTTLPPCVYTPAPPATQPPRTYPTTTPRPIPTTKTTVPQQWTTLPP 270

Query: 290 DTRPSP 307
              P+P
Sbjct: 271 GPEPTP 276


>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
            F31C3.3 protein.
          Length = 2029

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 257  PVPRKFPTWRIDTRPSPLAFYKPQRHSSDSIACIY 361
            P+P  FPT  +    SP+ FY   + +S    C Y
Sbjct: 899  PLPEPFPTHSVWKNMSPIKFYYDLQCASTEYNCTY 933


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,678,059
Number of Sequences: 27780
Number of extensions: 245721
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)