Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0538
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   4.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   7.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 43   FNFFNPPTLPEDPNSTVASDVQALLTADF 129
            FNF+NPP     P    A +V  +L   +
Sbjct: 1161 FNFWNPPPFMPSPFMAGAPNVPTILPEQY 1189



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 263 PRKFPTWRIDTRPSPLAFYKPQRHSS 340
           P   P W +  R +PL   +P + S+
Sbjct: 481 PTLLPQWCLPPREAPLVGVQPHQDSA 506


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 701 KRICLTRNASVVYHYKNLRLNMHYTLRRHRSLL 603
           KR  LT   SVV+H+ N R   H +L   + LL
Sbjct: 108 KRPELTNRKSVVFHHDNAR--PHTSLVTRQKLL 138


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 298 TVPPSLL*ASEAFVRLDRLYLLQQ 369
           T PP L+     F  +DRLY + +
Sbjct: 42  TKPPFLVQLHSCFQTMDRLYFVME 65


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 125 TLRSVTTSASASCLVPCCSTP 187
           T  SVT S SAS  + C  +P
Sbjct: 880 TSMSVTISLSASVTIACLFSP 900


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,516
Number of Sequences: 438
Number of extensions: 2874
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)