BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0538 (750 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 56 3e-08 At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 56 3e-08 At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 54 1e-07 At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil... 43 3e-04 At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 28 7.6 >At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP) Length = 372 Score = 56.0 bits (129), Expect = 3e-08 Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 3/61 (4%) Frame = +1 Query: 1 SVRTVTKSVQADSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRA 171 + + +TK +SFFNFF+PP +P ED + A D+Q L+ D++IG IRE+++ RA Sbjct: 232 NTKPITKLEDCESFFNFFSPPEVPDEDEDIDEERAEDLQNLMEQDYDIGSTIREKIIPRA 291 Query: 172 V 174 V Sbjct: 292 V 292 >At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP) Length = 374 Score = 55.6 bits (128), Expect = 3e-08 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 3/61 (4%) Frame = +1 Query: 1 SVRTVTKSVQADSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRA 171 + + +TK+ +SFFNFFNPP +P ED + A ++Q L+ D++IG IRE+++ A Sbjct: 231 NAKPITKTEDCESFFNFFNPPQVPDDDEDIDEERAEELQNLMEQDYDIGSTIREKIIPHA 290 Query: 172 V 174 V Sbjct: 291 V 291 >At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP) Length = 379 Score = 54.0 bits (124), Expect = 1e-07 Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 3/61 (4%) Frame = +1 Query: 1 SVRTVTKSVQADSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRA 171 + + +TK+ +SFFNFF+PP +P ED + +A ++Q + D++IG I+E+++S A Sbjct: 231 NTKPITKTEDCESFFNFFSPPQVPDDDEDLDDDMADELQGQMEHDYDIGSTIKEKIISHA 290 Query: 172 V 174 V Sbjct: 291 V 291 >At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family protein similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP) Length = 329 Score = 42.7 bits (96), Expect = 3e-04 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 8/62 (12%) Frame = +1 Query: 13 VTKSVQADSFFNFFNPPTLPE--------DPNSTVASDVQALLTADFEIGHYIRERVVSR 168 +TK+ +SFFNFF PP +PE D ++ + ++Q L+ D++I IR++++ Sbjct: 241 MTKTENCESFFNFFKPPEIPEIDEVDDYDDFDTIMTEELQNLMDQDYDIAVTIRDKLIPH 300 Query: 169 AV 174 AV Sbjct: 301 AV 302 >At1g73960.1 68414.m08565 expressed protein similar to TATA binding protein associated factor (GI:2827282) [Homo sapiens]; similar to Transcription initiation factor TFIID 150 kDa subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325) [Drosophila melanogaster] Length = 1390 Score = 27.9 bits (59), Expect = 7.6 Identities = 9/21 (42%), Positives = 16/21 (76%) Frame = -1 Query: 84 VRIFRQSWWVKEIEEGVSLDG 22 V++ R ++WV++IE G+ DG Sbjct: 156 VKLIRINYWVEKIESGIHFDG 176 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,670,968 Number of Sequences: 28952 Number of extensions: 219500 Number of successful extensions: 431 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 425 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 428 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1663169840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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