Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0538
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    56   3e-08
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    56   3e-08
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    54   1e-07
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    43   3e-04
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi...    28   7.6  

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   SVRTVTKSVQADSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRA 171
           + + +TK    +SFFNFF+PP +P   ED +   A D+Q L+  D++IG  IRE+++ RA
Sbjct: 232 NTKPITKLEDCESFFNFFSPPEVPDEDEDIDEERAEDLQNLMEQDYDIGSTIREKIIPRA 291

Query: 172 V 174
           V
Sbjct: 292 V 292


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   SVRTVTKSVQADSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRA 171
           + + +TK+   +SFFNFFNPP +P   ED +   A ++Q L+  D++IG  IRE+++  A
Sbjct: 231 NAKPITKTEDCESFFNFFNPPQVPDDDEDIDEERAEELQNLMEQDYDIGSTIREKIIPHA 290

Query: 172 V 174
           V
Sbjct: 291 V 291


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   SVRTVTKSVQADSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRA 171
           + + +TK+   +SFFNFF+PP +P   ED +  +A ++Q  +  D++IG  I+E+++S A
Sbjct: 231 NTKPITKTEDCESFFNFFSPPQVPDDDEDLDDDMADELQGQMEHDYDIGSTIKEKIISHA 290

Query: 172 V 174
           V
Sbjct: 291 V 291


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
 Frame = +1

Query: 13  VTKSVQADSFFNFFNPPTLPE--------DPNSTVASDVQALLTADFEIGHYIRERVVSR 168
           +TK+   +SFFNFF PP +PE        D ++ +  ++Q L+  D++I   IR++++  
Sbjct: 241 MTKTENCESFFNFFKPPEIPEIDEVDDYDDFDTIMTEELQNLMDQDYDIAVTIRDKLIPH 300

Query: 169 AV 174
           AV
Sbjct: 301 AV 302


>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
           protein associated factor (GI:2827282) [Homo sapiens];
           similar to Transcription initiation factor TFIID 150 kDa
           subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
           [Drosophila melanogaster]
          Length = 1390

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 84  VRIFRQSWWVKEIEEGVSLDG 22
           V++ R ++WV++IE G+  DG
Sbjct: 156 VKLIRINYWVEKIESGIHFDG 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,670,968
Number of Sequences: 28952
Number of extensions: 219500
Number of successful extensions: 431
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)