Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0537
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.3  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 410 TDPTPCIFPNQCLTPSRSPSHTR 478
           T PTP   P + LTPS+  S  R
Sbjct: 97  TPPTPSPPPEERLTPSKDASSKR 119



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 12  SLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCP 116
           +LP ++  P P R    L  + + SPT P   + P
Sbjct: 70  ALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPP 104


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 484 FLPGMGRASRRGKALVWEYARGRVCPHGPLLVLVPLCIRG 365
           FLPG GR ++ G   +     GR  P+   L +V +   G
Sbjct: 35  FLPGQGRVNQLGGVFI----NGRPLPNHIRLKIVEMAANG 70



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 146 QFTYRNPTQSKRRCLTQYMSQSTD-PSPSRYMCQNLTPLKRK 268
           +F+  NPT  +  C   +  +STD    S    +   PLKRK
Sbjct: 178 EFSVTNPTIKEDFCAVLWKDKSTDNEGVSDCDSEPGIPLKRK 219


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 451 GKALVWEYARGRVCPHGPLLVLVP 380
           G     EY   R  P G LLV VP
Sbjct: 845 GHNFTMEYLVSRGAPRGKLLVGVP 868


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,195
Number of Sequences: 336
Number of extensions: 3844
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)