Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0537
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.16
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.37
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.85
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 28 1.1
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 26 4.5
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 4.5
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 26 4.5
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.1 bits (67), Expect = 0.16
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +3
Query: 342 SRTCACSLPRIQRGTSTSKGPCGQTLPRAYSQTSALPRREARPIPGRKTSALPR*STR*P 521
S +C S G+S+ P T+P + ++++P IP TS+ S+ P
Sbjct: 226 STSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIP------IPPTSTSSTDTNSSPLP 279
Query: 522 PSACPC*ETSSVPREGTSARPL 587
++ C ++S+P G S P+
Sbjct: 280 TTSTSCTTSTSIPPTGNSTTPV 301
Score = 29.1 bits (62), Expect = 0.64
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = +3
Query: 342 SRTCACSLPRIQRGTSTSKGPCGQTLPRAYSQTSALPRREARPIPGRKTSALPR*STR*P 521
S T + S+P G+S+ P T+P + ++++P IP TS+ S+ P
Sbjct: 171 SCTTSTSIPPTG-GSSSLSTPITPTVPPTSTSSTSIP------IPPTSTSSTDTNSSPLP 223
Query: 522 PSACPC*ETSSVPREGTSARPLP 590
++ C ++S+P G+S+ P
Sbjct: 224 TTSTSCTTSTSIPTGGSSSLSTP 246
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +3
Query: 342 SRTCACSLPRIQRGTSTSKGPCGQTLPRAYSQTSALPRREARPIPGRKTSALPR*STR*P 521
S T + S+P G+S+ P T+P + ++++P IP TS+ S P
Sbjct: 114 SCTTSTSIPPTG-GSSSLSTPITPTVPPTSTSSTSIP------IPPTSTSSTDTNSNPLP 166
Query: 522 PSACPC*ETSSVPREGTSA 578
++ C ++S+P G S+
Sbjct: 167 TTSTSCTTSTSIPPTGGSS 185
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.37
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +3
Query: 450 PRREARPIPGRKTSALPR*STR*PPSACPC*ETSSVPREGTSARPLPRREAHPIPSPHRE 629
P EA P+P P PPS P T P G P+P +A P+P+P E
Sbjct: 1193 PPSEAPPVPKPSVGVPPVP----PPSTAPPVPT---PSAGLPPVPVPTAKAPPVPAPSSE 1245
Query: 630 A 632
A
Sbjct: 1246 A 1246
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 546 TSSVPREGTSAR--PLPRREAHPIPSPHREARACAHRETRTVP 668
TS+ P E ++A+ P P+ E P+PS + + +R+T P
Sbjct: 486 TSTQPTEQSNAQQAPSPKEEERPLPSEPSQNQPAEYRDTPDTP 528
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.85
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 522 PSACPC*ETSSVPREGTSARPLPRREAHPIPSPHREARACAHRETRTVPG*GTGTNS 692
P+ P PRE PLP RE+ P + + R+ ++ T P T T+S
Sbjct: 212 PARDPSDRVREEPREWVRRGPLPPRESSERPRLNLKPRSSSNVNTEATPSATTTTSS 268
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 526 LGGQRVL*RGRALVFLPGMGRASRRGKALVWEYARGRVCPH 404
LGG + RG + +G ASR G VWE G PH
Sbjct: 10 LGGHKQDVRGVCSISNELIGSASRDGTYSVWEQINGEWTPH 50
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 573 WYLHGVRNWFLNMDRHWA-VNVYFNGVGHWFFYRVW 469
WY ++ W L+ A V+ +F +GH+FF W
Sbjct: 77 WYFRDLQWWGLDYPPLTAYVSWFFGIIGHYFFNPEW 112
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/37 (21%), Positives = 19/37 (51%)
Frame = -2
Query: 552 NWFLNMDRHWAVNVYFNGVGHWFFYRVWDGLLDGVRH 442
+W L+ ++HW ++ G + + R+ D + + H
Sbjct: 108 SWVLHAEKHWEEYPHYAGYDYKDYVRLLDATKEAIAH 144
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 558 VRNWFLNMDRHWAVNVY 508
VR WF N+++H + NVY
Sbjct: 100 VRTWFSNVEQHASENVY 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,754
Number of Sequences: 5004
Number of extensions: 56028
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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