Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0537
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    31   0.79 
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    30   1.4  
Z81058-13|CAC35813.1|  522|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z81058-1|CAD42642.1|  458|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL031254-5|CAC35807.1|  522|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z82268-9|CAD89738.1|  509|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL023835-17|CAD89760.1|  509|Caenorhabditis elegans Hypothetical...    27   9.8  
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 49/214 (22%), Positives = 73/214 (34%)
 Frame = +3

Query: 18  PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 197
           PRR+  P     ++P P    RSP+  +    P P     +   S++   P+R+  + PS
Sbjct: 302 PRRRRSP--SASKSPPPARRRRSPSQSKS---PAPKRAKSR---SKSPPAPARRRRS-PS 352

Query: 198 TCPSRQTRPRQGICARTLPXXXXXXXXXXXXXXXXXXXXXXXTLPREGSRTCACSLPRIQ 377
              S    P++       P                       +  R  +        R +
Sbjct: 353 ASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRR 412

Query: 378 RGTSTSKGPCGQTLPRAYSQTSALPRREARPIPGRKTSALPR*STR*PPSACPC*ETSSV 557
           R  S SK P      ++ S++   PRR  R  P +  S  PR   R  PS  P       
Sbjct: 413 RSPSASKSPPAPKRAKSRSKSPPAPRR--RRSPSQSKSPAPR--RRRSPSKSPQAPRRRR 468

Query: 558 PREGTSARPLPRREAHPIPSPHREARACAHRETR 659
              G+ +R  PRR   P  +P R       R  R
Sbjct: 469 SPSGSKSRS-PRRRRSPAAAPRRRQSPQRRRSPR 501


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = +3

Query: 6   SCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEG 185
           S S PRR+    P ++    PR + RSP+ PR +       R  +    R+ + P R+  
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRR-------RISRSPVRRSRSPPRRQVS 140

Query: 186 ALPSTCPSRQTRPR 227
              S  P RQ R R
Sbjct: 141 RSRSPPPRRQQRSR 154


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
 Frame = +3

Query: 330 PREGSRTCACSLPRIQRGTSTSKGPCGQTLPR---AYSQTSALPRREARPI---PGRKTS 491
           P + +  C C   +  R   +S     Q  PR   A   T A P   A P    P   T 
Sbjct: 267 PGKDANYCPCPQRQDDRTPPSSGTSAPQPPPRGSTAAPGTRAPPATRAPPATRAPPATTR 326

Query: 492 ALPR*STR*PPSACPC*ETSSVPREGTSARPLPRREAHPIPS 617
           A P  +TR  P++ P       P  G  + P P+  AHP PS
Sbjct: 327 APPA-TTRPAPASQPPVREPETPDSGYPS-PAPQEPAHPSPS 366


>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/74 (21%), Positives = 31/74 (41%)
 Frame = +3

Query: 402 PCGQTLPRAYSQTSALPRREARPIPGRKTSALPR*STR*PPSACPC*ETSSVPREGTSAR 581
           P  +  P+   +    P+ + +P P  K    P+ + +  P   P  E    P+     +
Sbjct: 163 PKPEPKPKPKPEPKPKPKPDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPK 222

Query: 582 PLPRREAHPIPSPH 623
           P P+ +  P P+P+
Sbjct: 223 PKPKPKPKPKPNPN 236



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +3

Query: 450 PRREARPIPGRKTSALPR*STR*PPSACPC*ETSSVPREGTSARPLPRREAHPIPSPHRE 629
           P+ + +P P  K    P+   +  P   P  +  S P+     +P P+    P P+P  E
Sbjct: 227 PKPKPKPNPNPKPEPKPKPKPKPKPEPKPKTKLKSEPKPKPKLKPKPKPNPKPEPNPMPE 286

Query: 630 AR 635
            +
Sbjct: 287 LK 288


>Z81058-13|CAC35813.1|  522|Caenorhabditis elegans Hypothetical
           protein F11E6.1b protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = -2

Query: 456 DGVR-HWFGNMHGVGSVHMDLYWYLY--LFVYGVRSRHMYGNLHGVRYFLLYWVRSGHVH 286
           DGV  HW+GN++   +V +D+    +   F++G  +   Y   HG      +   +    
Sbjct: 331 DGVAVHWYGNLYSP-AVLLDITQRHHPTKFIFGTEACAGYAIHHGPLMGDWFTAENYASD 389

Query: 285 FDWNMNFLFNGVRFWHIYLDGDGSVDW 205
              ++N  F G   W++ LD  G   W
Sbjct: 390 IISDLNHHFTGWTDWNLCLDDMGGPTW 416


>Z81058-1|CAD42642.1|  458|Caenorhabditis elegans Hypothetical
           protein F11E6.1c protein.
          Length = 458

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = -2

Query: 456 DGVR-HWFGNMHGVGSVHMDLYWYLY--LFVYGVRSRHMYGNLHGVRYFLLYWVRSGHVH 286
           DGV  HW+GN++   +V +D+    +   F++G  +   Y   HG      +   +    
Sbjct: 331 DGVAVHWYGNLYSP-AVLLDITQRHHPTKFIFGTEACAGYAIHHGPLMGDWFTAENYASD 389

Query: 285 FDWNMNFLFNGVRFWHIYLDGDGSVDW 205
              ++N  F G   W++ LD  G   W
Sbjct: 390 IISDLNHHFTGWTDWNLCLDDMGGPTW 416


>AL031254-5|CAC35807.1|  522|Caenorhabditis elegans Hypothetical
           protein F11E6.1b protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = -2

Query: 456 DGVR-HWFGNMHGVGSVHMDLYWYLY--LFVYGVRSRHMYGNLHGVRYFLLYWVRSGHVH 286
           DGV  HW+GN++   +V +D+    +   F++G  +   Y   HG      +   +    
Sbjct: 331 DGVAVHWYGNLYSP-AVLLDITQRHHPTKFIFGTEACAGYAIHHGPLMGDWFTAENYASD 389

Query: 285 FDWNMNFLFNGVRFWHIYLDGDGSVDW 205
              ++N  F G   W++ LD  G   W
Sbjct: 390 IISDLNHHFTGWTDWNLCLDDMGGPTW 416


>Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical
           protein T07G12.3 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 195 WVRHLLFDWV-GLRYVNWYLDNLFNWVRDMFDN 100
           W+  +  DW+ G   V+ YL N F    +MFDN
Sbjct: 357 WLAWVAHDWIDGAARVDEYLVNYFKKHNNMFDN 389


>Z82268-9|CAD89738.1|  509|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1b protein.
          Length = 509

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +3

Query: 450 PRREARPIPGRKTSALPR*STR*PP--SACPC*ETSSVPREGTSARPLPRREAHPI-PSP 620
           P+R+ARP    + S  PR   R PP   A    + SS      + R   R  +  + PS 
Sbjct: 243 PKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSV 302

Query: 621 HREARACAHRETRTVP 668
            RE+ +   R  R +P
Sbjct: 303 RRESASPPRRRARIIP 318


>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +3

Query: 450 PRREARPIPGRKTSALPR*STR*PP--SACPC*ETSSVPREGTSARPLPRREAHPI-PSP 620
           P+R+ARP    + S  PR   R PP   A    + SS      + R   R  +  + PS 
Sbjct: 243 PKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSV 302

Query: 621 HREARACAHRETRTVP 668
            RE+ +   R  R +P
Sbjct: 303 RRESASPPRRRARIIP 318


>AL023835-17|CAD89760.1|  509|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1b protein.
          Length = 509

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +3

Query: 450 PRREARPIPGRKTSALPR*STR*PP--SACPC*ETSSVPREGTSARPLPRREAHPI-PSP 620
           P+R+ARP    + S  PR   R PP   A    + SS      + R   R  +  + PS 
Sbjct: 243 PKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSV 302

Query: 621 HREARACAHRETRTVP 668
            RE+ +   R  R +P
Sbjct: 303 RRESASPPRRRARIIP 318


>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +3

Query: 450 PRREARPIPGRKTSALPR*STR*PP--SACPC*ETSSVPREGTSARPLPRREAHPI-PSP 620
           P+R+ARP    + S  PR   R PP   A    + SS      + R   R  +  + PS 
Sbjct: 243 PKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSV 302

Query: 621 HREARACAHRETRTVP 668
            RE+ +   R  R +P
Sbjct: 303 RRESASPPRRRARIIP 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,307,331
Number of Sequences: 27780
Number of extensions: 341623
Number of successful extensions: 1185
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)