Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0537
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,... 34 0.10
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,... 34 0.10
At5g56270.1 68418.m07022 WRKY family transcription factor 33 0.18
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.73
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.73
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 29 2.2
At5g66850.1 68418.m08428 protein kinase family protein contains ... 28 5.2
At5g61090.1 68418.m07665 proline-rich family protein contains pr... 28 5.2
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 28 5.2
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 5.2
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie... 28 6.8
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.8
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.8
At4g31780.2 68417.m04510 1,2-diacylglycerol 3-beta-galactosyltra... 27 9.0
At4g31780.1 68417.m04509 1,2-diacylglycerol 3-beta-galactosyltra... 27 9.0
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 27 9.0
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 27 9.0
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 27 9.0
At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical ... 27 9.0
>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 33.9 bits (74), Expect = 0.10
Identities = 29/70 (41%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +3
Query: 330 PREGSRTCACSLPRIQRGTSTSKGPC---GQTLPRAYSQTSAL-PRREARPIPGRKTSAL 497
P SRT S I RG STS+G G + R S T L P R P G TS
Sbjct: 322 PASPSRTSFLSSSSISRGMSTSRGVSPSRGLSPSRGLSPTRGLSPSRGLSPSRGTNTSCF 381
Query: 498 PR*STR*PPS 527
R ST PPS
Sbjct: 382 ARPST--PPS 389
>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 33.9 bits (74), Expect = 0.10
Identities = 29/70 (41%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +3
Query: 330 PREGSRTCACSLPRIQRGTSTSKGPC---GQTLPRAYSQTSAL-PRREARPIPGRKTSAL 497
P SRT S I RG STS+G G + R S T L P R P G TS
Sbjct: 322 PASPSRTSFLSSSSISRGMSTSRGVSPSRGLSPSRGLSPTRGLSPSRGLSPSRGTNTSCF 381
Query: 498 PR*STR*PPS 527
R ST PPS
Sbjct: 382 ARPST--PPS 389
>At5g56270.1 68418.m07022 WRKY family transcription factor
Length = 687
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 346 REPSRGKVLSSLLGKERARALRLEHELSFQRGKVL 242
R PS G + SS +G+E++ LE ELS G+V+
Sbjct: 17 RSPSPGTLFSSAIGEEKSSKRVLERELSLNHGQVI 51
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.1 bits (67), Expect = 0.73
Identities = 43/174 (24%), Positives = 64/174 (36%), Gaps = 2/174 (1%)
Frame = +3
Query: 21 RRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDC--QGTSSRTATLPSRKEGALP 194
RR P+ R + P PR SP+ R + P P +G+ R P R+ LP
Sbjct: 245 RRPGSPIRRRGDTP-PRRRPASPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLP 303
Query: 195 STCPSRQTRPRQGICARTLPXXXXXXXXXXXXXXXXXXXXXXXTLPREGSRTCACSLPRI 374
R PR+ R+ P PR+G R
Sbjct: 304 LR--RRSPPPRR---LRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPAG----RR 354
Query: 375 QRGTSTSKGPCGQTLPRAYSQTSALPRREARPIPGRKTSALPR*STR*PPSACP 536
R +S S P + +PR S++ R RP+ G+++S+ S+ PP P
Sbjct: 355 GRSSSYSSSPSPRRIPRKISRS----RSPKRPLRGKRSSSNSSSSSSPPPPPPP 404
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = +3
Query: 18 PRRKAHPLPGRKENPLPRES----ARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEG 185
PRR L R+ +PLPR RSP P + P R R PSR G
Sbjct: 212 PRRPRERLSPRRRSPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSR--G 269
Query: 186 ALPSTCPSRQTR-PRQG 233
PS+ P R+ R P +G
Sbjct: 270 RSPSSPPPRRYRSPPRG 286
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.1 bits (67), Expect = 0.73
Identities = 43/174 (24%), Positives = 64/174 (36%), Gaps = 2/174 (1%)
Frame = +3
Query: 21 RRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDC--QGTSSRTATLPSRKEGALP 194
RR P+ R + P PR SP+ R + P P +G+ R P R+ LP
Sbjct: 252 RRPGSPIRRRGDTP-PRRRPASPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLP 310
Query: 195 STCPSRQTRPRQGICARTLPXXXXXXXXXXXXXXXXXXXXXXXTLPREGSRTCACSLPRI 374
R PR+ R+ P PR+G R
Sbjct: 311 LR--RRSPPPRR---LRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPAG----RR 361
Query: 375 QRGTSTSKGPCGQTLPRAYSQTSALPRREARPIPGRKTSALPR*STR*PPSACP 536
R +S S P + +PR S++ R RP+ G+++S+ S+ PP P
Sbjct: 362 GRSSSYSSSPSPRRIPRKISRS----RSPKRPLRGKRSSSNSSSSSSPPPPPPP 411
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 370 RGKEQ--AHVREPSRGKVLSSLLGKERARALRLEHELSFQRGK 248
+ KEQ A V E R K K + +LRL+ E+ FQR K
Sbjct: 575 KAKEQVLAQVEEEQRSKEAIEASNKRKVESLRLKIEIDFQRHK 617
>At5g66850.1 68418.m08428 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K gamma protein kinase GI:2315152
Length = 716
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 18 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDC 137
P R + PL + PR+S SP PR T RDC
Sbjct: 267 PSRPSSPLHSVDSSAPPRDSVSSPLHPRLSTDVTNGRRDC 306
>At5g61090.1 68418.m07665 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
common family members: At4g18570, At3g25690, At4g04980
[Arabidopsis thaliana]
Length = 344
Score = 28.3 bits (60), Expect = 5.2
Identities = 37/108 (34%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Frame = +3
Query: 339 GSRTCACSLPRIQRGTST--SKGPCGQTLPRAYSQTSALPRREA-RPIPGRKTSALPR*S 509
G A S + R TS + P +T P A A P E RP+P R T PR
Sbjct: 73 GGNGVAVSPVKPARATSQVPKRVPPSRT-PEAPRSVPACPIPEIPRPVPARPTPETPRPV 131
Query: 510 TR*P----PSACPC*ETSS----VPREGTSARPLPRREAHP---IPSP 620
T P P P S VP TS P P AHP +PSP
Sbjct: 132 TARPTPEIPRPVPARPISEVQTLVPTRPTSTAPSP-VSAHPTSVVPSP 178
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 15 LPRRKAHPLPGRKENPLPRESARSPTLP 98
+P K P+P K P+P S SP++P
Sbjct: 39 VPSPKPKPVPSPKPKPVPSPSVPSPSVP 66
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 96 VGLGNVHFHGVGDFLFYRVGDVLFDGVGN 10
VG+G+V GVGD VGDV DGVG+
Sbjct: 194 VGVGDVGQGGVGDVGQGGVGDVGRDGVGD 222
>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
PIR:S53363
Length = 438
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 152 TYRNPTQSKRRCLTQYMSQSTDPSPSRYMCQNLTPLKRK 268
T R+ + K+ TQ + ++ SP R + ++LTP RK
Sbjct: 127 TIRSSSVPKKTTTTQIQASASVSSPKRTVSRSLTPSSRK 165
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 36 PLPGRKENPLPRESARSPTLPRCQT---CPLPS*RDCQGTSSRTATLPSRKEGALPSTCP 206
P +P PR +RSP+ R ++ PLPS Q S++ + PS + + + P
Sbjct: 245 PAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPS---VQKEGSKSPSKPSPAKSPIHTRSP 301
Query: 207 SR 212
SR
Sbjct: 302 SR 303
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 36 PLPGRKENPLPRESARSPTLPRCQT---CPLPS*RDCQGTSSRTATLPSRKEGALPSTCP 206
P +P PR +RSP+ R ++ PLPS Q S++ + PS + + + P
Sbjct: 245 PAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPS---VQKEGSKSPSKPSPAKSPIHTRSP 301
Query: 207 SR 212
SR
Sbjct: 302 SR 303
>At4g31780.2 68417.m04510 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative similar to MGD synthase type A from
Arabidopsis thaliana [gi:9927297], similar to
monogalactosyldiacylglycerol synthase, Cucumis sativus,
PID:g1805254
Length = 533
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 324 TLPREGSRTCACSLPRIQRGTSTSKGPCGQTLPRAYSQTSALPRREARPIPGRK 485
T+ +E + PR++ TS ++ PC + A S ++AL R +P R+
Sbjct: 6 TVTQESAAPVFDFFPRLRGLTSRNRSPCSNSDGYALSSSNALYFNGFRTLPSRR 59
>At4g31780.1 68417.m04509 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative similar to MGD synthase type A from
Arabidopsis thaliana [gi:9927297], similar to
monogalactosyldiacylglycerol synthase, Cucumis sativus,
PID:g1805254
Length = 504
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 324 TLPREGSRTCACSLPRIQRGTSTSKGPCGQTLPRAYSQTSALPRREARPIPGRK 485
T+ +E + PR++ TS ++ PC + A S ++AL R +P R+
Sbjct: 6 TVTQESAAPVFDFFPRLRGLTSRNRSPCSNSDGYALSSSNALYFNGFRTLPSRR 59
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.5 bits (58), Expect = 9.0
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +3
Query: 333 REGSRTCACSLPRIQRGTSTSKGPCGQTLPRAYSQTSALPRREARPIPGRKTSALPR*ST 512
R SR+ + P +R S S P + + S + + P +R G + + +
Sbjct: 156 RSRSRSRGYNSPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSG--SPGRVKSHS 213
Query: 513 R*PP-SACPC*ETSSVPREGTSARPLPRREAHPIPSP 620
R P S P S P + S P+PR+ P P P
Sbjct: 214 RSPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPVP 250
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 86 PNPTPLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPSRYMCQN 247
P+ + S TQ + S+ Q ++ +QS+ + +Q SQS SPS+ Q+
Sbjct: 765 PSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQS 818
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.5 bits (58), Expect = 9.0
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 21 RRKAHPLPGRKENPLPRESARSPTLP-RCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 197
RR H GR+++P P RSP+ P R + P P R R+ + P+R+ +
Sbjct: 293 RRPTHE--GRRQSPAPSRRRRSPSPPARRRRSPSPPAR-----RRRSPSPPARRHRS--P 343
Query: 198 TCPSRQTR 221
T P+RQ R
Sbjct: 344 TPPARQRR 351
>At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical to
plastid heme oxygenase (HY1) [Arabidopsis thaliana]
GI:4877362, heme oxygenase 1 [Arabidopsis thaliana]
GI:4530591 GB:AF132475; annotation updated per Seth J.
Davis at University of Wisconsin-Madison
Length = 282
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 104 SNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPS 229
S++S+ + +LSR+QF+ +P R Q +S + + SPS
Sbjct: 9 SSLSIFKNPQLSRFQFSSSSPNPLFLRPRIQILSMTMNKSPS 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,669,692
Number of Sequences: 28952
Number of extensions: 329337
Number of successful extensions: 1089
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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