Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0533
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   7.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.3  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   9.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 131 CSTASTGFVAKTTTFSLTCLL 69
           C     G++   T  SL CLL
Sbjct: 173 CKPLKAGYICTKTRASLICLL 193


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 131 CSTASTGFVAKTTTFSLTCLL 69
           C     G++   T  SL CLL
Sbjct: 173 CKPLKAGYICTKTRASLICLL 193


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 305 SPESGPTHRLPQRLRSI 355
           SPE G  HR+ + LR +
Sbjct: 108 SPEVGKDHRIKRFLRGV 124


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 358  STXLINKLLXHVKHWMVQISSAXRYQLIGASSKDPLNHI 474
            S  ++NK L H++  +       R + + ASS+   +H+
Sbjct: 1140 SLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHL 1178


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 358  STXLINKLLXHVKHWMVQISSAXRYQLIGASSKDPLNHI 474
            S  ++NK L H++  +       R + + ASS+   +H+
Sbjct: 1140 SLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHL 1178


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 358  STXLINKLLXHVKHWMVQISSAXRYQLIGASSKDPLNHI 474
            S  ++NK L H++  +       R + + ASS+   +H+
Sbjct: 1140 SLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHL 1178


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 358  STXLINKLLXHVKHWMVQISSAXRYQLIGASSKDPLNHI 474
            S  ++NK L H++  +       R + + ASS+   +H+
Sbjct: 1140 SLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHL 1178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,406
Number of Sequences: 336
Number of extensions: 2194
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)