Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0533
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 92 6e-20
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 46 4e-06
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 45 9e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 43 5e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 42 8e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 39 6e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.003
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.004
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.010
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 35 0.010
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 35 0.013
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 34 0.017
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 34 0.022
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.030
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.039
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.12
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 30 0.37
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.48
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.64
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.85
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 27 3.4
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 3.4
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 26 4.5
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 92.3 bits (219), Expect = 6e-20
Identities = 42/92 (45%), Positives = 62/92 (67%)
Frame = +3
Query: 195 PXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYK 374
P +SVEG+I+ V+ VH EA E F++FG +KN+HLNLDRRTG++KGYAL EY T +
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLE 62
Query: 375 QAAXAREALDGADILGQXISVDWCFVKGPTKS 470
QA A + +L + + VD+ F++ P ++
Sbjct: 63 QAQKAVDE-KNLSLLDEKLEVDFAFLEPPERA 93
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 46.4 bits (105), Expect = 4e-06
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+++ N+ + E D FSEFGE +I+L D+ TG KG+A +Y + A + +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 402 DGADILGQXISVD 440
+L + + VD
Sbjct: 93 TNVKLLDRLVRVD 105
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 45.2 bits (102), Expect = 9e-06
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L V+N+ ++ +E + F FG I+ ++L D+ TG KG+A Y A AR+ L
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 402 DG 407
DG
Sbjct: 264 DG 265
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LF+ N+ E D F FG+++ +H+ +D++T KG+A ++ A A L
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 402 DGADILGQXISV 437
D G+ + V
Sbjct: 385 DAKPFQGRLLHV 396
Score = 35.1 bits (77), Expect = 0.010
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +3
Query: 210 EGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHL--NLDRRTGFLKGYALFEYXTYKQAA 383
+G + + N+ EA + D +G+++++ + DR +G+A E+ T ++AA
Sbjct: 719 KGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSA---RGFAFAEFVTAREAA 775
Query: 384 XAREALDGADILGQXISVDW 443
A AL +LG+ + + +
Sbjct: 776 NAMRALKNTHLLGRHLVLQY 795
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 41.9 bits (94), Expect = 8e-05
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L VSN+H + D F FG+I+ +HL D + KG+ +Y A A E +
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQYRNPISARNALEKM 400
Query: 402 DGADILGQXISV 437
+G D+ G+ + V
Sbjct: 401 NGFDLAGRNMRV 412
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFVS + QE + FS+FG + ++ + + T +G+ + T ++A A + L
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 402 DGADILGQXISV 437
+ + G+ ++V
Sbjct: 163 NSQEFYGRVLNV 174
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +3
Query: 276 FSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISVDWCFVK 455
FS+FG+++ I + + G + G+A K A A +L+G +I G+ I+VDW K
Sbjct: 128 FSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
Score = 34.7 bits (76), Expect = 0.013
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV N+ + ++ D FS+ G IK+ + + TG +GY + + A A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 402 DGADILGQXISVDW 443
+ G+ + +D+
Sbjct: 67 KNKKLHGRILRLDF 80
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.3 bits (80), Expect = 0.004
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA- 398
+FV N+ A E D F G+I++I L D ++G LKG F Y T+ A++
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKG---FGYVTFSDIDSAKKCV 424
Query: 399 -LDGADILGQXISVDW 443
++G I G+ +D+
Sbjct: 425 EMNGHFIAGRPCRLDF 440
Score = 33.5 bits (73), Expect = 0.030
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 204 SVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAA 383
S E +FV + + +F E+G I + +D ++G KGY ++ T +AA
Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET-PEAA 317
Query: 384 XAREALDGA-DILGQXISVD 440
A A +G +I G+ +++D
Sbjct: 318 KAAVAANGTKEIDGRMVNLD 337
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 35.1 bits (77), Expect = 0.010
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+ V N+ + F +G I +I + + +++ KGY EY + QAA A + +
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 402 DGADILGQXISV 437
+ A++ G+ + V
Sbjct: 161 NNAELDGEELFV 172
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+L+V + E FS+FG + + ++ +R+TG K YA E+ + A E
Sbjct: 106 VLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
Query: 399 LDGADILGQXI 431
+ + G+ +
Sbjct: 166 MHNYLLYGKLL 176
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 34.7 bits (76), Expect = 0.013
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV N+ E FS G++ G KGY Y +++ A A EA+
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 402 DGADILGQXISVDWCF 449
+ ++ + I+V + F
Sbjct: 161 NNQFLMNKPITVSYAF 176
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 34.3 bits (75), Expect = 0.017
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXARE 395
ILFV N+ E + D F + G+I+ + L TG KG+ ++ A E
Sbjct: 229 ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 33.9 bits (74), Expect = 0.022
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+LFV ++ Q+ D FS FG+I + + D+ TG YA E+ + A
Sbjct: 245 VLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFK 304
Query: 399 LDGADILGQXISVDW 443
+ I I VD+
Sbjct: 305 MQNVLIDDSRIHVDF 319
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.5 bits (73), Expect = 0.030
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +3
Query: 210 EGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXA 389
+G LF+ N+ +E + +FS FG I + + D + G KG+ Y T ++A A
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKA 420
Query: 390 REALDGADILGQXISV 437
++ + G+ + V
Sbjct: 421 VTEMNQRMLAGKPLYV 436
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.1 bits (72), Expect = 0.039
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = +3
Query: 171 EGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYA 350
E D P V LF+ + +E F FG ++++ LN + R GFLK
Sbjct: 391 ERDPTIPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLK--- 447
Query: 351 LFEYXTYKQAAXAREALDGAD 413
+F ++A A E + AD
Sbjct: 448 MFRRDAAEKAQVAMENVPFAD 468
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/77 (23%), Positives = 30/77 (38%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+++SN+ E FG++ + L + G KG+ E+ A A L
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 402 DGADILGQXISVDWCFV 452
DG D G + + V
Sbjct: 372 DGKDTYGNKLHAQFACV 388
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEY 362
+FV V + E + F++FG + + L +D+ TG +G+ Y
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.5 bits (63), Expect = 0.48
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = +3
Query: 177 DSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQ--FSEFGEIKNIHLNLDRRTGFLKGYA 350
+S P ++ L+V N+ + + FS FG I + L +G KGY
Sbjct: 369 ESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYG 428
Query: 351 LFEYXTYKQAAXAREALDGADILGQXISVDWCFVK 455
+ + A A++ L+G + + I V CF +
Sbjct: 429 FVAFRQIEAAVRAKDTLNGMMVGKKRIFV--CFAE 461
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.64
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
++V N+ E FS+ GEI+ I + +DR T G+ EY + A + + +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 402 DGADILGQXISVD 440
+ + I D
Sbjct: 94 SRTSLDERIIRAD 106
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 28.7 bits (61), Expect = 0.85
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +3
Query: 186 TPXPXRSVEGWILFVSNVHEE--AQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFE 359
TP +++ LFV N+ + FS+FG IK+ L T KGY
Sbjct: 409 TPTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVS 468
Query: 360 YXTYKQAAXAREALDG 407
+ +A A L+G
Sbjct: 469 FSHPFEAVQAINTLNG 484
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 382 LXHVKHWMVQISSAXRYQLIGASSKDPL 465
+ + W V+++S+ Y ++GA +K PL
Sbjct: 250 ISYTSAWCVRVTSSTTYSMVGALNKLPL 277
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEY 362
+FVSN+ F FGE+ ++ L L+ TG G +
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISF 142
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/74 (25%), Positives = 28/74 (37%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + E D F FG I NI + + GF+ +Y A A +
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFV------QYSEKSAAEKAINTM 352
Query: 402 DGADILGQXISVDW 443
GA + I + W
Sbjct: 353 QGALVGTSHIRLAW 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,541
Number of Sequences: 5004
Number of extensions: 34525
Number of successful extensions: 89
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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