Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0533
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 4e-37
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 50 1e-06
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 44 1e-04
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 44 2e-04
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 42 4e-04
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 40 0.003
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 37 0.018
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.018
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.042
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.055
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 34 0.13
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 33 0.17
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 33 0.22
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 32 0.39
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 31 0.68
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 31 0.90
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05) 31 1.2
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 29 2.7
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 3.6
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 4.8
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 28 6.3
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 28 6.3
SB_46757| Best HMM Match : BACK (HMM E-Value=4.5) 28 8.4
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 8.4
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 151 bits (367), Expect = 4e-37
Identities = 77/142 (54%), Positives = 101/142 (71%), Gaps = 4/142 (2%)
Frame = +3
Query: 54 IARLKEKARKRKGRGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRS----VEGWI 221
+ R+K +K+KGRGF G ++ R + YDS+ G+ G P R VEGWI
Sbjct: 243 VQRVKS-GKKKKGRGFS----GDKSSSRPDA--YDSIEG-GEGGESGPARCEWHPVEGWI 294
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV+N+HEEAQE D FS++GEIKN+H+NLDRRTGF+KGYAL EY T+K+A A EAL
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 402 DGADILGQXISVDWCFVKGPTK 467
+GA++LGQ ISVDW F++GP+K
Sbjct: 355 NGAEMLGQNISVDWAFIRGPSK 376
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV N+ EA E FSE G + + L DR TG KGY EY + A A L
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 402 DGADILGQXISVD 440
+G ++ G+ + VD
Sbjct: 87 NGYELNGRALRVD 99
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 47.6 bits (108), Expect = 1e-05
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +3
Query: 204 SVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAA 383
S++ LFVSN+ +A+E + FS+ G +K + L + R G KGY EY A+
Sbjct: 167 SLDKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRL-VTNRAGKPKGYGYVEYEQESSAS 225
Query: 384 XAREALDGADILGQXISV 437
A LD ++ G+ ISV
Sbjct: 226 TAVLTLDKTEVKGRTISV 243
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/108 (26%), Positives = 48/108 (44%)
Frame = +3
Query: 114 GGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGE 293
G S++ +R S S TP P + L+V+++ + FS +G
Sbjct: 1129 GKRSSSSSSSRSRSRSPRRRKRSPTPKPTK------LYVAHLTRNVNKDHVQEIFSVYGR 1182
Query: 294 IKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISV 437
+K + L DR +G+A EY ++ A + +DG I GQ I+V
Sbjct: 1183 VKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAV 1230
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+++++VH + E D F FG++ + L+ + TG KGY EY + A A ++
Sbjct: 201 IYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASM 260
Query: 402 DGADILGQXISVDWCFVKGPTKS 470
+ D+ GQ + V + PT S
Sbjct: 261 NLFDLGGQFLRVGRA-ITPPTSS 282
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +3
Query: 228 VSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDG 407
V+N+ EE +E D F G I I L D+ T KG+A + + AA A E L G
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSG 244
Query: 408 ADILGQXISVDW 443
++V+W
Sbjct: 245 FGYDHLILNVEW 256
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKG 344
LFV N+ E+ +E D F +G++ +H+ DR TG KG
Sbjct: 321 LFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKG 361
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/81 (25%), Positives = 33/81 (40%)
Frame = +3
Query: 174 GDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYAL 353
G+ G P G +F+ + + E + + GEI+ L +D TG KG+A
Sbjct: 139 GERGFPTTWTEESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAF 198
Query: 354 FEYXTYKQAAXAREALDGADI 416
+ A A L+ DI
Sbjct: 199 CTFTEQTSAYQAITTLNDKDI 219
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +3
Query: 210 EGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXA 389
+GW +FV + +EA FS +G I NI L LD KGY Y++A A
Sbjct: 270 QGWCIFVYGLPQEATPLFLYKLFSPYGAITNIELKLD------KGYGFVNMSNYEEACHA 323
Query: 390 REALDG 407
L+G
Sbjct: 324 ICCLNG 329
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 285 FGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISVDWC 446
+GEI N++L D++TG KG+ Y + A + +G + G+ I VD C
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVDHC 55
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L+V N+ A + F +FG + + + + G+A EY Y+ A A L
Sbjct: 6 LYVGNLGRNADSSELERAFEKFGRLSKVWVARNP-----PGFAFVEYEDYRDAEEAVREL 60
Query: 402 DGADILGQXISVDWCFVKG 458
DGA++ + I V++ +G
Sbjct: 61 DGANVCDRTIRVEFSNNRG 79
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 36.7 bits (81), Expect = 0.018
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDR--RTGFLKGYALFEYXTYKQAAXARE 395
L + N+ E FS FGE+ + + R G+ ++ AA A E
Sbjct: 249 LIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALE 308
Query: 396 ALDGADILGQXISVDWCFVKGPTKSHXKRRXK*CNLVTI 512
++ ILG+ ++VDW K + ++ K N T+
Sbjct: 309 EMNAKKILGRPVAVDWAVPKSMYTENQEKHKKDYNSNTL 347
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 35.5 bits (78), Expect = 0.042
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+F+ + E S FGE++ +L D TG KGYA EY A + L
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734
Query: 402 DGADI 416
+G +
Sbjct: 735 NGMQL 739
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 35.1 bits (77), Expect = 0.055
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
++V + E+ E F + G + N+H+ DR T +GY E+ + A A + +
Sbjct: 15 IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVM 74
Query: 402 DGADILGQXISVD 440
+ + G+ I V+
Sbjct: 75 NMIKVYGKPIRVN 87
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLK--GYALFEYXTYKQAAXARE 395
+F+ N+ + +E F+ G ++++ L DR+TG K GY LFE K A
Sbjct: 58 VFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFE---SKDAVVFAL 114
Query: 396 ALDGADILGQXISV 437
++ A+ G+ I V
Sbjct: 115 KMNNAEFKGRKIRV 128
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 33.9 bits (74), Expect = 0.13
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Frame = +3
Query: 174 GDSGTPXPXRSVEGWI----LFVSNVHEEAQEXDXXXQFSEFGEIKNI----HLNLDRRT 329
G SG P ++ + L++ N+ + E + +FGEI++ H N R
Sbjct: 369 GTSGVPLAAPEIDDAVSERKLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNR- 427
Query: 330 GFLKGYALFEYXTYKQAAXAREALDGADILGQXISVDW 443
G +GY E+ + A A L+ +L + + VDW
Sbjct: 428 GEPRGYCFVEFKKKEDARKALRGLNKKIVLSRALVVDW 465
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/85 (22%), Positives = 41/85 (48%)
Frame = +3
Query: 186 TPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYX 365
TP + G L+V+N+ + D +FS++G++ + + + + + L
Sbjct: 339 TPTKDKKEGGKSLWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVTMT 398
Query: 366 TYKQAAXAREALDGADILGQXISVD 440
T ++AA + L ++ G+ I+VD
Sbjct: 399 TSEEAAKCIQHLHRTELHGRAITVD 423
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 33.5 bits (73), Expect = 0.17
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+LFV ++ + D FS FG I + + D++TG YA E+ + A
Sbjct: 121 VLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFK 180
Query: 399 LDGADILGQXISVDW 443
+D I + I VD+
Sbjct: 181 MDNVLIDDRRIHVDF 195
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQA 380
LFV + E + FS++GE+ + + +D TG +G+A ++ +A
Sbjct: 31 LFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEA 83
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +3
Query: 225 FVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALD 404
++ N+ + E D +FS + ++ ++ + DR T +G+A + + K A LD
Sbjct: 233 YIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELD 291
Query: 405 GADILGQXISVD 440
G + G+ + V+
Sbjct: 292 GQEFDGRSMKVN 303
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 33.1 bits (72), Expect = 0.22
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 1/123 (0%)
Frame = +3
Query: 72 KARKRKGRGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWI-LFVSNVHEE 248
K R R F E G S +RG Y+ G S R G LFV N+ +
Sbjct: 7 KPRSRNSDSFSKERGD-SRGDRGGGRNYNRNNGAGYSSMKE--RKFTGRCRLFVGNLID- 62
Query: 249 AQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQX 428
E + F ++GE+ + +N + KG+ T A A+ LD A G+
Sbjct: 63 CDEEEMKEMFKKYGEVAEVFINKE------KGFGFIRLDTRLHAEAAKAGLDMATRKGRT 116
Query: 429 ISV 437
+ V
Sbjct: 117 LRV 119
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 32.3 bits (70), Expect = 0.39
Identities = 19/87 (21%), Positives = 41/87 (47%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+++ N+ + A + + +F FG ++++ + + G+A + + A A L
Sbjct: 4 VYIGNIGDNASKREIEREFETFGPLRDVWVARNP-----PGFAFCVFEDRRDAEDAVREL 58
Query: 402 DGADILGQXISVDWCFVKGPTKSHXKR 482
DG I GQ V+ KGP++ ++
Sbjct: 59 DGRYICGQRARVE--LAKGPSRGRPRQ 83
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/86 (23%), Positives = 39/86 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + E E + F E+G +K + D+ G KGYA + + + A R+
Sbjct: 10 IFVKGFNRETTESELRAFFEEYGVVKESKIVRDKH-GVSKGYAFITFESQEVADGLRDN- 67
Query: 402 DGADILGQXISVDWCFVKGPTKSHXK 479
G D + +S+ + ++S+ +
Sbjct: 68 KGLDFKDKVLSIGQAVRRKSSRSYSR 93
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/71 (19%), Positives = 34/71 (47%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
++++ ++ E + F +FG + I L+ +++ KGYA E+ + A A +
Sbjct: 99 VIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADT 158
Query: 399 LDGADILGQXI 431
+ + G+ +
Sbjct: 159 MHNYMMFGRLL 169
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 276 FSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQA 380
FSEFG++ + L + G +KG+A E+ + +QA
Sbjct: 108 FSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQA 142
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 243 EEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALD 404
++ + D +F FG+I+ + + D +T KGY ++ AA A E D
Sbjct: 62 KDFNDEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALENCD 115
>SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)
Length = 365
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +3
Query: 276 FSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISVDWCFVK 455
FSE+GEI+N+ L + F++ Y L + A R++LD ++L ++ W K
Sbjct: 152 FSEWGEIENMRLLEHKGVAFVR-YKLRGSAEFAMEAMQRQSLDDNEVL----NIRWA-TK 205
Query: 456 GPTKSHXKRRXK 491
P KR+ K
Sbjct: 206 DPNPWVEKRKRK 217
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/93 (21%), Positives = 43/93 (46%)
Frame = +3
Query: 201 RSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQA 380
R E +++ ++ + A + + +F +G +K++ + + G+A + + A
Sbjct: 27 RRAEMTKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNP-----PGFAFCIFDDRRDA 81
Query: 381 AXAREALDGADILGQXISVDWCFVKGPTKSHXK 479
A LDG I GQ + V+ KGP++ +
Sbjct: 82 EDAVRELDGRYICGQRVRVE--LAKGPSRGRPR 112
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 276 FSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISV 437
FS+ G + + ++ G +G+A +Y T ++A + A +G + G I V
Sbjct: 226 FSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 285 FGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDG 407
+GEI N++L D++TG KG+ Y + A + +G
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 63 LKEKARKRKGRGFGNEAGGGSAAERGNRG 149
++ R+R G G G GGG RG RG
Sbjct: 995 VRRPRRRRGGGGGGGGGGGGGGGRRGGRG 1023
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = +3
Query: 204 SVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKN---IHLNLDRRTGFLKGYALFEYXTYK 374
SV LFV ++ + + + +FS+ + ++L+ D++ G +G+A EY +++
Sbjct: 229 SVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQK-GKNRGFAFLEYESHQ 287
Query: 375 QAAXAREALDGADIL---GQXISVDW 443
A+ AR L I ++VDW
Sbjct: 288 AASLARRRLASGRIKVWGNIVVTVDW 313
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXA 389
LFV + E+ + F++FGEI+ + DR T KGY T A A
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELA 67
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 276 FSEFGEIKNIHLNLDRRTGFLKGYA 350
FS FG + ++ + DRRTG KG A
Sbjct: 1086 FSNFGPVADVRIVCDRRTGLNKGDA 1110
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 63 LKEKARKRKGRGFGNEAGGGSAAERGNRG 149
++ R+R G G G GGG RG RG
Sbjct: 506 VRRPRRRRGGGGGGGGGGGGGGGGRGGRG 534
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +3
Query: 90 GRGFGNEAG-GGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVH 242
G G E G G ERG +G + S+ G G P + L N H
Sbjct: 300 GYGLMGEKGTAGRLGERGKKGPFGSIGDMGPPGEPGKPGEILNLHLLKQNTH 351
>SB_46757| Best HMM Match : BACK (HMM E-Value=4.5)
Length = 81
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 208 LKAGSCLSVMYMKKHKXKIXXXNFPSLVR 294
L+A S + + MKKH I NFP + R
Sbjct: 20 LEAASTIGAVDMKKHALDIIVHNFPKIAR 48
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV N+ + D F +GE+ I +++ ++ G YA ++ A AR +
Sbjct: 251 LFVGNIEKTTTYGDLKEAFERYGEV--IDVDIKKQPG-NNPYAFVQFAELSSAIQARRKM 307
Query: 402 D 404
D
Sbjct: 308 D 308
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,435,586
Number of Sequences: 59808
Number of extensions: 267616
Number of successful extensions: 653
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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