Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0533
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    27   0.75 
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   2.3  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   4.0  
AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.          23   7.0  
AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.          23   7.0  
AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.          23   7.0  
AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.          23   7.0  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 26.6 bits (56), Expect = 0.75
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +3

Query: 66   KEKARKRKGRGFGNEAGGGSA-----AERGNRGXYDSLAXEGDSGTPXPXRSVEG 215
            KE+ RK + +   ++ GGGS      A RG+ G  DS   EG+       +   G
Sbjct: 935  KERKRKGEKKPRKSQGGGGSRKRKEKARRGSGGDSDSEEEEGEGSRKRKKKGASG 989


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 87  KGRGFGNEAGG-GSAAERGNRGXYDSLAXEGDSGTPXP 197
           K RG    +G  G   E+G+RG    +   G+ G P P
Sbjct: 579 KDRGPSGPSGPLGPQGEKGDRGDSGLMGRPGNDGLPGP 616



 Score = 23.4 bits (48), Expect = 7.0
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +3

Query: 93  RGFGNEAGG-GSAAERGNRGXYDSLAXEGDSGTPXP 197
           RG   E GG G   + G  G       +GD GTP P
Sbjct: 115 RGPKGERGGMGDRGDPGLPGSLGYPGEKGDLGTPGP 150


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 66  KEKARKRKGRGFGNEAGGGSAAE-RGN 143
           +++ R+R+G G G   GGG   + RGN
Sbjct: 238 RDRDREREGGGNGGGGGGGMQLDGRGN 264


>AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 93  RGFGNEAGGGSAAERGN 143
           RGF    GGGS    GN
Sbjct: 216 RGFSASGGGGSGGSAGN 232


>AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 93  RGFGNEAGGGSAAERGN 143
           RGF    GGGS    GN
Sbjct: 216 RGFSASGGGGSGGSAGN 232


>AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 93  RGFGNEAGGGSAAERGN 143
           RGF    GGGS    GN
Sbjct: 216 RGFSASGGGGSGGSAGN 232


>AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 93  RGFGNEAGGGSAAERGN 143
           RGF    GGGS    GN
Sbjct: 216 RGFSASGGGGSGGSAGN 232


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,162
Number of Sequences: 2352
Number of extensions: 9845
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)