Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0533
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 140 7e-34
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 55 4e-08
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 49 4e-06
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 43 2e-04
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 43 2e-04
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 41 0.001
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 40 0.001
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 38 0.009
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 38 0.009
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 38 0.009
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 36 0.028
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 35 0.064
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 35 0.064
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 35 0.064
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 35 0.064
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 35 0.064
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 34 0.085
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 34 0.085
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 34 0.11
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 34 0.11
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 34 0.11
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 34 0.11
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 33 0.15
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 33 0.15
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 32 0.34
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 32 0.45
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 31 0.79
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 31 0.79
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 31 1.0
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 31 1.0
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 31 1.0
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 30 1.4
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 30 1.4
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 30 1.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.2
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 28 5.6
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 140 bits (340), Expect = 7e-34
Identities = 70/124 (56%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Frame = +3
Query: 114 GGGSAAERGN-RGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFG 290
G G A R R YD + E + + P RSVEGWI+FV+N+HEEA E D +FSE+G
Sbjct: 20 GRGLAQSRNRERITYDVVDEESSATSGAPQRSVEGWIVFVTNIHEEATEDDVHDKFSEYG 79
Query: 291 EIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISVDWCFVKGPTKS 470
+IKNIHLNLDRRTGFLKGYAL EY T K+A A + + D+LGQ + VDWCFVKG K+
Sbjct: 80 KIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVDWCFVKG-KKT 138
Query: 471 HXKR 482
KR
Sbjct: 139 SGKR 142
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 55.2 bits (127), Expect = 4e-08
Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Frame = +3
Query: 60 RLKEKARKRKGRG-FGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSN 236
R +E +R R R +G GGG RG Y D P P + L V N
Sbjct: 35 RERESSRSRSPRARYGGGGGGGGGGGRGRNQQY-------DRENPQPSK-----CLGVFN 82
Query: 237 VHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADI 416
+ E D F EFGEI L DR +G +G+ + + A AR+ L D+
Sbjct: 83 LSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCNTDL 142
Query: 417 LGQXISVDWCFVK 455
G I VD+ K
Sbjct: 143 DGHKIRVDFSLTK 155
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/72 (30%), Positives = 40/72 (55%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LF+ N+ +E D F ++GE+ + + +D++TG KG+A+ E+ + A A AL
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSAL 340
Query: 402 DGADILGQXISV 437
DG G+ + +
Sbjct: 341 DGYVFKGRMMHI 352
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/78 (28%), Positives = 39/78 (50%)
Frame = +3
Query: 207 VEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAX 386
+ G+ ++V N + E D FS+ G + N+ + DR TG +G+A E+ A
Sbjct: 1 MSGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQR 60
Query: 387 AREALDGADILGQXISVD 440
A + +G D G+ + V+
Sbjct: 61 AVDQFNGVDFNGRALRVN 78
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
++V N + E + FS G+I N+ + DR TG +G+A E+ A A E +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 402 DGADILGQXISVD 440
+GA+ G+ + V+
Sbjct: 67 NGAEFNGRPLRVN 79
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/81 (30%), Positives = 39/81 (48%)
Frame = +3
Query: 195 PXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYK 374
P G+ LFV N+ + + FS+FG I N+ + D T KGYA Y
Sbjct: 367 PPSDTAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNYT 425
Query: 375 QAAXAREALDGADILGQXISV 437
+A A +L+G ++ G+ + V
Sbjct: 426 EAYNAMLSLNGTNLAGKTLQV 446
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L ++ + + + + F+ GEI++ L D+ TG GY Y + A A +
Sbjct: 44 LIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSF 103
Query: 402 DGADILGQXISVDW 443
+G + + I V +
Sbjct: 104 NGLRLQNKTIKVSY 117
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +3
Query: 216 WILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXARE 395
WI ++ + E D FS++GE+ NI+L D+ TG KG+A Y + A +
Sbjct: 39 WI-YIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVD 97
Query: 396 ALDGADILGQXISVD 440
+G + + I VD
Sbjct: 98 NFNGISLHKRMIRVD 112
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 42.7 bits (96), Expect = 2e-04
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +3
Query: 102 GNEAGGGSAAERGNRGXYDSLAX-EGDSGTPXPXRSVEGWI-LFVSNVHEEAQEXDXXXQ 275
G+ +GGG G ++ A E P + G LFV N+ E +E +
Sbjct: 76 GHRSGGGGGRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKEL 135
Query: 276 FSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISV 437
FS G+I +L+ G KG+A T A A+EA+DG I G+ + V
Sbjct: 136 FSPHGDIAECYLS-----G--KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRV 182
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 42.7 bits (96), Expect = 2e-04
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +3
Query: 102 GNEAGGGSAAERGNRGXYDSLAX-EGDSGTPXPXRSVEGWI-LFVSNVHEEAQEXDXXXQ 275
G+ +GGG G ++ A E P + G LFV N+ E +E +
Sbjct: 76 GHRSGGGGGRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKEL 135
Query: 276 FSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISV 437
FS G+I +L+ G KG+A T A A+EA+DG I G+ + V
Sbjct: 136 FSPHGDIAECYLS-----G--KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRV 182
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+LFV ++ + D FS FG+I N + DRR+G YA E+ K A
Sbjct: 242 VLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFK 301
Query: 399 LDGADILGQXISVDW 443
+D I + I VD+
Sbjct: 302 MDNVLIDDRRIHVDF 316
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+LFV ++ + D FS FG+I N + DRR+G YA E+ K A
Sbjct: 242 VLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFK 301
Query: 399 LDGADILGQXISVDW 443
+D I + I VD+
Sbjct: 302 MDNVLIDDRRIHVDF 316
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+LFV ++ + D FS FG+I N + DRR+G YA E+ K A
Sbjct: 173 VLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFK 232
Query: 399 LDGADILGQXISVDW 443
+D I + I VD+
Sbjct: 233 MDNVLIDDRRIHVDF 247
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV ++ E E +F +G+IK + + D G +GYA EY + A +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDE-AGKPRGYAFIEYSDKAEMHTAYKKA 164
Query: 402 DGADILGQXISVDW 443
DG + G+ + VD+
Sbjct: 165 DGIKVDGKRLVVDY 178
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +3
Query: 228 VSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDG 407
V+N+ +E E + F + G + I + D+ TG KG+A + + AA A L+
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 408 ADILGQXISVDW 443
+ + V+W
Sbjct: 240 IRMYHMVLKVEW 251
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXT---YKQAAXAR 392
+FV + E D F+++GE+ + DR G +G+A E+ T K A AR
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 393 E 395
E
Sbjct: 91 E 91
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXT---YKQAAXAR 392
+FV + E D F+++GE+ + DR G +G+A E+ T K A AR
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 393 E 395
E
Sbjct: 91 E 91
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 35.9 bits (79), Expect = 0.028
Identities = 31/119 (26%), Positives = 50/119 (42%)
Frame = +3
Query: 87 KGRGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDX 266
+G G+ GGG G R Y + + E + + ++V N+ E +
Sbjct: 218 RGGDRGDRRGGGG----GGRDRYHNQS-EKTYDEIFNQAAADNTSVYVGNI-ANLGEDEI 271
Query: 267 XXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISVDW 443
F FG I + RT ++GYA ++ T + AA A ++ ADI GQ + W
Sbjct: 272 RRAFDRFGPINEV------RTFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSW 324
Score = 35.1 bits (77), Expect = 0.049
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV ++ E F +FGE+ + D T KGY Y + A A + +
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 402 DGADILGQXISVDW 443
+GA + + I +W
Sbjct: 194 NGAWLGRRTIRTNW 207
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV ++ E F FG++ + + D T KGY Y ++A A E +
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 402 DGADILGQXISVDW 443
+G + + I +W
Sbjct: 84 NGQWLGRRTIRTNW 97
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV ++ E F FG++ + + D T KGY Y ++A A E +
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 402 DGADILGQXISVDW 443
+G + + I +W
Sbjct: 94 NGQWLGRRTIRTNW 107
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV ++ E F FG++ + + D T KGY Y ++A A E +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 402 DGADILGQXISVDW 443
+G + + I +W
Sbjct: 197 NGQWLGRRTIRTNW 210
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV ++ E F FG++ + + D T KGY Y ++A A E +
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 402 DGADILGQXISVDW 443
+G + + I +W
Sbjct: 165 NGQWLGRRTIRTNW 178
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 34.7 bits (76), Expect = 0.064
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 276 FSEFGEIKNIHLNLDRRTGFL-KGYALFEYXTYKQAAXAREALDGADILGQXISVD 440
FS +G IKN+ L DR + +GY EY + A + + +DG I G + V+
Sbjct: 153 FSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVE 208
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = +3
Query: 195 PXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYK 374
P + + LFV + +E D F +FG+I + D+ TG KG A Y
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRD 81
Query: 375 QAAXAREAL 401
A + L
Sbjct: 82 SAVRCQATL 90
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +3
Query: 186 TPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYX 365
TP +G LF+ ++ +E + + F+ FG I + + +DR T K + Y
Sbjct: 419 TPREVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYD 478
Query: 366 TYKQAAXAREALDGADI 416
+ A A++G I
Sbjct: 479 NIHSSQAAITAMNGFQI 495
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +3
Query: 177 DSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALF 356
DS P ++ LF+ + ++ E + F+ FGE+ + + L G KG A
Sbjct: 111 DSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTV-LRGADGASKGCAFV 169
Query: 357 EYXTYKQAAXAREALDGADIL 419
+Y A A AL G+ +
Sbjct: 170 KYKHGLDAHMAISALHGSQTM 190
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = +3
Query: 195 PXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYK 374
P + + LFV + +E D F +FG+I + D+ TG KG A Y
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRD 81
Query: 375 QAAXAREAL 401
A + L
Sbjct: 82 SAVRCQATL 90
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +3
Query: 186 TPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYX 365
TP +G LF+ ++ +E + + F+ FG I + + +DR T K + Y
Sbjct: 419 TPREVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYD 478
Query: 366 TYKQAAXAREALDGADI 416
+ A A++G I
Sbjct: 479 NIHSSQAAITAMNGFQI 495
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +3
Query: 177 DSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALF 356
DS P ++ LF+ + ++ E + F+ FGE+ + + L G KG A
Sbjct: 111 DSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTV-LRGADGASKGCAFV 169
Query: 357 EYXTYKQAAXAREALDGADIL 419
+Y A A AL G+ +
Sbjct: 170 KYKHGLDAHMAISALHGSQTM 190
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L VSN+ ++ D F +FG + ++ + + R KG+ + A AR+ L
Sbjct: 155 LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGS--KGFGFVTMERPQDAERARQEL 212
Query: 402 DGADILGQXISVD 440
G+ I G+ I V+
Sbjct: 213 HGSMIEGRKIEVN 225
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L VSN+ ++ D F +FG + ++ + + R KG+ + A AR+ L
Sbjct: 155 LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGS--KGFGFVTMERPQDAERARQEL 212
Query: 402 DGADILGQXISVD 440
G+ I G+ I V+
Sbjct: 213 HGSMIEGRKIEVN 225
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
++VS+VH + E D F FGEI L +G+ E+ + A +
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGM 268
Query: 402 DGADILGQXISVDWC 446
+ D+ GQ + V C
Sbjct: 269 NMFDLGGQYLRVGKC 283
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
++VS+VH + E D F FGEI L +G+ E+ + A +
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGM 268
Query: 402 DGADILGQXISVDWC 446
+ D+ GQ + V C
Sbjct: 269 NMFDLGGQYLRVGKC 283
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L + N+ + D F +G+I ++H+ D+ + KG+ + + A A +
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80
Query: 402 DGADILGQXISV 437
DG + G+ + V
Sbjct: 81 DGKLVDGRELRV 92
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L + N+ + D F +G+I ++H+ D+ + KG+ + + A A +
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80
Query: 402 DGADILGQXISV 437
DG + G+ + V
Sbjct: 81 DGKLVDGRELRV 92
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/86 (20%), Positives = 37/86 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV ++ ++ F++FGE+ + D +T KGY + + A A +
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 402 DGADILGQXISVDWCFVKGPTKSHXK 479
+G I + + +W K ++ K
Sbjct: 197 NGKWIGKRAVRTNWAARKNSEENRDK 222
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQA 380
+FV NVH +A + + FS+FG + ++ + + G KG A ++ T A
Sbjct: 685 VFVRNVHFQATDDELKALFSKFGTVTSVR-RVTHKDGKPKGIAFVDFDTEASA 736
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 255 EXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDG 407
E + F +FG + I + +RRTG KG+A + A A E+++G
Sbjct: 45 EKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNG 95
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 31.5 bits (68), Expect = 0.60
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Frame = +3
Query: 216 WILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTG-FLKGYALFEYXTYKQAAXAR 392
W L + N+ + ++ D S G+ I L R+ G+ ++ A R
Sbjct: 95 WRLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDPKTCAGFGFIQFVEKADAEKGR 154
Query: 393 EALDGADILGQXISVDWCFVKG--PTKSHXKRR 485
E + +LG+ ++ DW K T +H +++
Sbjct: 155 EFFNTNKVLGRSVAADWALDKDTYETNAHEEKQ 187
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 300 NIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISVD 440
+IHL DR +G KG+A + +Q A L+GAD + + V+
Sbjct: 40 DIHLVHDRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVN 86
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 18 NNLKSTNMVNRAIARLKEKARKRKGRGFGNEAGGGSAAERGNRG 149
+ L + NR + + + R R RG G GG+ +RG RG
Sbjct: 71 SGLNGADFGNRVLKVNRAQQRDRSDRGGGRGGRGGNFGDRGGRG 114
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
++VS+VH + E D F FGEI L R +G+ F Y + EA+
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQL---ARAPTGRGHRGFGYLEFNNLTSQSEAI 265
Query: 402 DGADI 416
G ++
Sbjct: 266 AGMNM 270
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
++V + +A + F FG I+ + + RR G+A EY + A A AL
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVA--RRP---PGFAFVEYDDVRDAEDAVRAL 59
Query: 402 DGADILGQXISVD 440
DG+ I G V+
Sbjct: 60 DGSRICGVRARVE 72
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
++V + +A + F FG I+ + + RR G+A EY + A A AL
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVA--RRP---PGFAFVEYDDVRDAEDAVRAL 59
Query: 402 DGADILGQXISVD 440
DG+ I G V+
Sbjct: 60 DGSRICGVRARVE 72
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
++V + +A + F FG I+ + + RR G+A EY + A A AL
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVA--RRP---PGFAFVEYDDVRDAEDAVRAL 59
Query: 402 DGADILGQXISVD 440
DG+ I G V+
Sbjct: 60 DGSRICGVRARVE 72
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+ V N+H + E F FG I+ I L +D +G+A + A + E L
Sbjct: 129 VLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRE-NRGFATITFRNADDAQKSCEQL 187
Query: 402 DGADILGQXI 431
+ ++ G+ I
Sbjct: 188 NNFELAGRCI 197
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+ V N+H + E F FG I+ I L +D +G+A + A + E L
Sbjct: 274 VLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRE-NRGFATITFRNADDAQKSCEQL 332
Query: 402 DGADILGQXI 431
+ ++ G+ I
Sbjct: 333 NNFELAGRCI 342
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +3
Query: 102 GNEAGGGSAAERGNRGXYDSLAX-EGDSGTPXPXRSVEGWI-LFVSNVHEEAQEXDXXXQ 275
G+ +GGG G ++ A E P + G LFV N+ E +E +
Sbjct: 76 GHRSGGGGGRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKEL 135
Query: 276 FSEFGEIKNIHLN 314
FS G+I +L+
Sbjct: 136 FSPHGDIAECYLS 148
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 93 RGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEG 215
+GFGN GG +GN+G + G +G+P P G
Sbjct: 102 QGFGNNQQGGFGGNQGNQGGFG-----GRTGSPPPFGGFSG 137
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 93 RGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEG 215
+GFGN GG +GN+G + G +G+P P G
Sbjct: 123 QGFGNNQQGGFGGNQGNQGGFG-----GRTGSPPPFGGFSG 158
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 93 RGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEG 215
+GFGN GG +GN+G + G +G+P P G
Sbjct: 108 QGFGNNQQGGFGGNQGNQGGFG-----GRTGSPPPFGGFSG 143
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
ILF SN+ E + FS+F ++ + R K +A EY + + AR+A
Sbjct: 144 ILFCSNIPEGTEPEQIQTIFSQFPGLREV-----RWMPNTKDFAFIEYESEDLSEPARQA 198
Query: 399 LD 404
LD
Sbjct: 199 LD 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,057,872
Number of Sequences: 27780
Number of extensions: 200286
Number of successful extensions: 697
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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