Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0533
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 139 1e-33
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 54 1e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 54 1e-07
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 54 1e-07
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 52 3e-07
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 50 1e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 49 3e-06
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 48 5e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 48 5e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 48 8e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 48 8e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 46 3e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 46 3e-05
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 46 3e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 45 6e-05
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 45 6e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 44 1e-04
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 44 1e-04
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 44 1e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 43 2e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 42 4e-04
At5g51300.1 68418.m06359 splicing factor-related contains simila... 42 4e-04
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 42 4e-04
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 42 4e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 42 5e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 41 7e-04
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 41 0.001
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 40 0.002
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 40 0.002
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 0.002
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 40 0.002
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 39 0.003
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 39 0.003
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 39 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.005
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 38 0.006
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 38 0.008
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 38 0.008
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 38 0.008
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 38 0.008
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 37 0.011
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 37 0.011
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 37 0.015
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 37 0.015
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 37 0.015
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 37 0.015
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 37 0.015
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 36 0.020
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.026
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 36 0.026
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 36 0.026
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 36 0.026
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.026
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 36 0.026
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.026
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 36 0.034
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 36 0.034
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 35 0.045
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 35 0.045
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 35 0.045
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 35 0.060
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 35 0.060
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 34 0.079
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 34 0.079
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 34 0.079
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.079
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 34 0.079
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 34 0.079
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 34 0.079
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 34 0.10
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 33 0.14
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 33 0.14
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.14
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 33 0.18
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 32 0.32
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 32 0.42
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 32 0.42
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 32 0.42
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 32 0.42
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 32 0.42
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 32 0.42
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 32 0.42
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 32 0.42
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 31 0.56
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 31 0.56
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 31 0.56
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 31 0.56
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 31 0.73
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 31 0.73
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 31 0.73
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 31 0.73
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 31 0.73
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 31 0.73
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 31 0.73
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 31 0.97
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 31 0.97
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 31 0.97
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 31 0.97
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 31 0.97
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 0.97
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 31 0.97
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 0.97
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 30 1.3
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 30 1.3
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 30 1.3
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 30 1.3
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 30 1.3
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 30 1.3
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 30 1.3
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 30 1.3
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 30 1.3
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 30 1.3
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 30 1.3
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 30 1.7
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 30 1.7
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 30 1.7
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 30 1.7
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 30 1.7
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 30 1.7
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 30 1.7
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 29 2.2
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 29 2.2
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 29 2.2
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 29 3.0
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 29 3.0
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 29 3.0
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 29 3.0
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 3.0
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 3.0
At1g09890.1 68414.m01113 expressed protein ; expression supporte... 29 3.9
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 28 5.2
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 28 5.2
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 28 5.2
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 28 6.8
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 28 6.8
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 28 6.8
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 28 6.8
At2g17740.1 68415.m02055 DC1 domain-containing protein 28 6.8
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 28 6.8
At5g64670.1 68418.m08127 ribosomal protein L15 family protein 27 9.0
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 27 9.0
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 27 9.0
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 27 9.0
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 139 bits (337), Expect = 1e-33
Identities = 69/139 (49%), Positives = 88/139 (63%)
Frame = +3
Query: 69 EKARKRKGRGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEE 248
E A+K KGRGF E +R ++SL G G P P RSVEGWI+ VS VHEE
Sbjct: 50 ESAKKTKGRGFREEKDSDRQRRLSSRD-FESL---GSDGRPGPQRSVEGWIILVSGVHEE 105
Query: 249 AQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQX 428
QE D F +FGEIKN++LNLDRR+G++KGYAL EY ++A A A++GA++L Q
Sbjct: 106 TQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQN 165
Query: 429 ISVDWCFVKGPTKSHXKRR 485
+SVDW F GP+ RR
Sbjct: 166 VSVDWAFSSGPSGGESYRR 184
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/125 (27%), Positives = 57/125 (45%)
Frame = +3
Query: 87 KGRGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDX 266
+G G+G+E GGG ++R G S SG+ S G L+V N+ +
Sbjct: 206 RGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMAL 265
Query: 267 XXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISVDWC 446
F+E G++ + DR +G KG+ + ++ A +L+GAD+ G+ I V
Sbjct: 266 ENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325
Query: 447 FVKGP 461
+ P
Sbjct: 326 EARPP 330
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/125 (27%), Positives = 57/125 (45%)
Frame = +3
Query: 87 KGRGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDX 266
+G G+G+E GGG ++R G S SG+ S G L+V N+ +
Sbjct: 214 RGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMAL 273
Query: 267 XXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISVDWC 446
F+E G++ + DR +G KG+ + ++ A +L+GAD+ G+ I V
Sbjct: 274 ENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333
Query: 447 FVKGP 461
+ P
Sbjct: 334 EARPP 338
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
++V + + E D FS++GEI +++L D+ TG KG+A Y + A + L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 402 DGADILGQXISVDWCFVKGPTKSH 473
+GA +LG+ I VD C G K H
Sbjct: 98 NGALVLGRTIKVDHC---GAYKKH 118
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/73 (36%), Positives = 38/73 (52%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFVS ++ E+ E +F +G IK +HL D+ T KGYA EY + A +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 402 DGADILGQXISVD 440
DG I G+ + VD
Sbjct: 200 DGQKIDGRRVLVD 212
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 50.4 bits (115), Expect = 1e-06
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Frame = +3
Query: 108 EAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWIL-----FVSNVHEEAQEXDXXX 272
EAGG + G D++ EGD ++V +L FV N+ A E +
Sbjct: 225 EAGGVGKDDDG-----DAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELME 279
Query: 273 QFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISV 437
FS FG+I +HL LD+ T +G A Y + AA A E LD + G+ + +
Sbjct: 280 HFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGRLLHI 334
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L V N+ EA + + FS FG+IK++ L + G GYA E+ T ++A A++AL
Sbjct: 671 LHVKNIAFEATKRELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEFVTKQEALNAKKAL 729
Query: 402 DGADILGQXISVDW 443
G+ + ++W
Sbjct: 730 ASTHFYGRHLVLEW 743
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/111 (23%), Positives = 52/111 (46%)
Frame = +3
Query: 141 NRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLD 320
N + L+ + +S TP ++ LFVS + + F++FGE+ + + D
Sbjct: 31 NASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTD 90
Query: 321 RRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISVDWCFVKGPTKSH 473
R +G+ KG+ Y T + +A +DG + G I ++ + ++S+
Sbjct: 91 RVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSY 141
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/72 (30%), Positives = 40/72 (55%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L V N+ + ++ D F +FG +K+I+L D TG +G+ ++ AA A+ +
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 402 DGADILGQXISV 437
DG +LG+ ++V
Sbjct: 99 DGYLLLGRELTV 110
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L V N+ + ++ D F +FG +K+I+L D TG +G+ ++ AA A+ +
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 402 DGADILGQXISVDWCFV--KGPTKSHXKRR 485
DG +LG+ ++V + K PT+ + R
Sbjct: 98 DGYLLLGRELTVVFAEENRKKPTEMRARER 127
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LF+ + E F+++GE+ + + LDR TG +G+ + + + A+ A +AL
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 402 DGADILGQXISVDW 443
DG D+ G+ + V++
Sbjct: 102 DGRDLHGRVVKVNY 115
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/79 (29%), Positives = 44/79 (55%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + E FS++GE+ + + +DR TG +G+A + + ++A+ A + L
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 94
Query: 402 DGADILGQXISVDWCFVKG 458
DG D+ G+ I V++ +G
Sbjct: 95 DGQDLHGRRIRVNYATERG 113
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/87 (28%), Positives = 43/87 (49%)
Frame = +3
Query: 183 GTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEY 362
G P + + L V N+ D F+++G++ ++ + DRRTG +G+A Y
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 363 XTYKQAAXAREALDGADILGQXISVDW 443
+A A E LDG + G+ I+V +
Sbjct: 65 KYKDEAHKAVERLDGRVVDGREITVQF 91
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/87 (28%), Positives = 43/87 (49%)
Frame = +3
Query: 183 GTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEY 362
G P + + L V N+ D F+++G++ ++ + DRRTG +G+A Y
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 363 XTYKQAAXAREALDGADILGQXISVDW 443
+A A E LDG + G+ I+V +
Sbjct: 65 KYKDEAHKAVERLDGRVVDGREITVQF 91
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/88 (29%), Positives = 40/88 (45%)
Frame = +3
Query: 174 GDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYAL 353
G T P +FV+NVH A + F++FGE+ + D TG G A
Sbjct: 502 GTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAY 561
Query: 354 FEYXTYKQAAXAREALDGADILGQXISV 437
E+ T K+AA +LDG + + + +
Sbjct: 562 IEF-TRKEAAENALSLDGTSFMSRILKI 588
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LF+ + E FS FGE+ + + D+ +G +G+ ++ A A++A+
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 402 DGADILGQXISVDW 443
DG +LG+ + + +
Sbjct: 103 DGKGLLGRPLRISF 116
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXARE 395
++VSNV + FS FGEI+ L LD+ TG KG+ALF Y + + A A E
Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + + + F ++GEI++ +D+ +G KGY + +K + AR AL
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYG---FILFKSRSGARNAL 186
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/109 (28%), Positives = 48/109 (44%)
Frame = +3
Query: 159 SLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFL 338
S A G SG P +S L+VSN+ D FS FG++ + + DR T
Sbjct: 42 SSAPGGGSGGLAPSKST----LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQS 97
Query: 339 KGYALFEYXTYKQAAXAREALDGADILGQXISVDWCFVKGPTKSHXKRR 485
+G A Y + + AA A ++D + G+ ++V G K+R
Sbjct: 98 RGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIAADNGRASEFIKKR 146
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXARE 395
++VSNV E FS+FGEI+ L LD+ TG KG+ LF Y + + A A E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + + + F ++GEI++ D+ +G KGY + YK + AR AL
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG---FILYKSRSGARNAL 198
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXARE 395
++VSNV E FS+FGEI+ L LD+ TG KG+ LF Y + + A A E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + + + F ++GEI++ D+ +G KGY + YK + AR AL
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG---FILYKSRSGARNAL 198
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXARE 395
++VSNV E FS+FGEI+ L LD+ TG KG+ LF Y + + A A E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + + + F ++GEI++ D+ +G KGY + YK + AR AL
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG---FILYKSRSGARNAL 198
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L+V N+H E F FG ++ + L LD TG KG+ ++ + + A+ AL
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 402 DG-ADILGQXISV 437
+G +I G+ I V
Sbjct: 327 NGKLEIAGRTIKV 339
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +3
Query: 228 VSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDG 407
V+N+ E+ +E D F FG + +++ +D++TG +G+ + + + A A L+G
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 408 ADILGQXISVDW 443
+ V+W
Sbjct: 277 YGYDNLILRVEW 288
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 41.9 bits (94), Expect = 4e-04
Identities = 30/113 (26%), Positives = 50/113 (44%)
Frame = +3
Query: 99 FGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQF 278
+ N AG G++A G G + T P + + L++ + ++ F
Sbjct: 451 WANNAGNGASAHPGL----------GSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLF 500
Query: 279 SEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISV 437
S FGEI + DR TG KGY +Y + A A +A++G G+ ++V
Sbjct: 501 SSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 41.9 bits (94), Expect = 4e-04
Identities = 30/113 (26%), Positives = 50/113 (44%)
Frame = +3
Query: 99 FGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQF 278
+ N AG G++A G G + T P + + L++ + ++ F
Sbjct: 451 WANNAGNGASAHPGL----------GSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLF 500
Query: 279 SEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISV 437
S FGEI + DR TG KGY +Y + A A +A++G G+ ++V
Sbjct: 501 SSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = +3
Query: 216 WILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXARE 395
W L + N+ +A+ D FS G + ++ + + TG KG+A ++ K AA A +
Sbjct: 331 WKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIK 390
Query: 396 ALDGADILGQXISVDWCFVK 455
+G + I+VDW K
Sbjct: 391 KFNGHMFGKRPIAVDWAVPK 410
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LF+ N+ + + + +F+ FGE++++ L L + T +G A ++ T + A A
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 402 DGADILG 422
D A +G
Sbjct: 623 DTASGVG 629
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/105 (23%), Positives = 42/105 (40%)
Frame = +3
Query: 117 GGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEI 296
G S A RG + +P E +L V ++ E F FGE+
Sbjct: 65 GKSPAGPARRGRSPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEV 124
Query: 297 KNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXI 431
++ + +DR +G+ E+ A A+ +DGA I G+ +
Sbjct: 125 IHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVV 169
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/105 (23%), Positives = 42/105 (40%)
Frame = +3
Query: 117 GGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEI 296
G S A RG + +P E +L V ++ E F FGE+
Sbjct: 65 GKSPAGPARRGRSPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEV 124
Query: 297 KNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXI 431
++ + +DR +G+ E+ A A+ +DGA I G+ +
Sbjct: 125 IHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVV 169
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LF++ + E F FGE+ + + +D+ + KGYA EY T + A A + +
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 402 DGADILGQXISVD 440
+G I G I VD
Sbjct: 344 NGKIINGWMIVVD 356
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 41.5 bits (93), Expect = 5e-04
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Frame = +3
Query: 69 EKARKRKGRGF-GNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWIL---FVSN 236
+KA + GR G E A ERG RG + + + E I F ++
Sbjct: 352 QKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDAS 411
Query: 237 VHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADI 416
+ E+ + FS GEIKN+ + +DR TG KG A E+ K+ A L+G+D+
Sbjct: 412 LSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKAL---ELNGSDM 468
Query: 417 LG 422
G
Sbjct: 469 GG 470
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
++V N+ + FSE G++ + DR +G KG+ Y + ++ A ++L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 402 DGADILGQXISVDWCFVKGPTKSH 473
DGAD+ G+ I V + P + +
Sbjct: 266 DGADLDGRQIRVSEAEARPPRRQY 289
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/74 (33%), Positives = 34/74 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV + E S++G IKN+ L TG +GY EY T K+ A E
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 402 DGADILGQXISVDW 443
+ I G+ I VD+
Sbjct: 126 HHSLIDGREIIVDY 139
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = +3
Query: 171 EGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYA 350
+G+SG P + +FV V + E D F +FGE+ ++ + +R GF+
Sbjct: 267 QGNSGESDPTNTT----IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFV---- 318
Query: 351 LFEYXTYKQAAXAREALDGADILGQXISVDW 443
+Y A A L+G + GQ I + W
Sbjct: 319 --QYANRACAEQALSVLNGTQLGGQSIRLSW 347
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/74 (24%), Positives = 39/74 (52%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L+V + +E E F FG+IK++ LD+ + + + + A+ A + +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 402 DGADILGQXISVDW 443
DGA++ G+ ++V++
Sbjct: 75 DGAELYGRVLTVNY 88
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LF+ N+ E ++ + F FG++ + + +D+ TG K + Y + A A +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 402 DGADILGQXISV 437
+G + G+ + V
Sbjct: 401 NGCQLSGKKLKV 412
Score = 36.7 bits (81), Expect = 0.015
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV + + E + FSE+G IK++ + L KG +Y + +QA A EAL
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 402 DGADIL 419
+G I+
Sbjct: 170 NGRHIM 175
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LF+ N+ E ++ + F FG++ + + +D+ TG K + Y + A A +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 402 DGADILGQXISV 437
+G + G+ + V
Sbjct: 392 NGCQLSGKKLKV 403
Score = 36.7 bits (81), Expect = 0.015
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV + + E + FSE+G IK++ + L KG +Y + +QA A EAL
Sbjct: 102 LFVGMLPKNVSETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 402 DGADIL 419
+G I+
Sbjct: 161 NGRHIM 166
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/116 (22%), Positives = 49/116 (42%)
Frame = +3
Query: 195 PXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYK 374
P + ILFV NV ++ + F +FG+++ +H G +G+ + Y +
Sbjct: 204 PQGEILSRILFVRNVDSSIEDCELGVLFKQFGDVRALH-----TAGKNRGFIMVSYYDIR 258
Query: 375 QAAXAREALDGADILGQXISVDWCFVKGPTKSHXKRRXK*CNLVTIXLSHXKLXNI 542
A A AL G + G+ + + + K K + N + +S+ +L I
Sbjct: 259 AAQKAARALHGRLLRGRKLDIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGI 314
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +3
Query: 210 EGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXA 389
EG +FV + E + D FS FG+I + + L+R TG +G+ + + +
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 390 REALDGADILGQXISVD 440
+ G D + ISV+
Sbjct: 65 IREMHGRDFGDRVISVN 81
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFVS + + FS FG+IK L D T KG+ + + A A ++L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 402 DGADILGQXISVD 440
DG + G+ I V+
Sbjct: 69 DGKIVDGRLIFVE 81
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV + E FSEFG++ N+ + + RT GY + + + A A EA+
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 402 DGADILGQXISV 437
+G G+ I V
Sbjct: 139 NGKFFDGRFILV 150
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+F+ + + E D E GEI + L DR +G KGYA + T A A E L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 402 DGADILGQXI 431
+ G+ I
Sbjct: 178 HSKEFKGKTI 187
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 37.5 bits (83), Expect = 0.008
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Frame = +3
Query: 102 GNEAGGGSAAERGNR-GXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQF 278
GN GG N G ++A G G G LFV ++H + + +
Sbjct: 195 GNVNGGIPPGPGSNMVGNGANIAMPGVVGGGTGGGGGGGAFLFVGDLHWWTTDAELEAEL 254
Query: 279 SEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISVDW 443
++G +K + ++ +G KGY E+ A+ ++AL+G G+ V++
Sbjct: 255 CKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVVEY 309
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV +V A E + F + G + + L D+RTG +G +Y T K A A AL
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Score = 31.5 bits (68), Expect = 0.56
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Frame = +3
Query: 129 AERGNRGXYDSLAXEGDSGTPXPXRSVEG---------WILFVSNVHEEAQEXDXXXQFS 281
A+R R ++ + G +G P R +G + LFV +++++A E + F
Sbjct: 174 ADRAIRALHNQITLPGGTG-PVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFL 232
Query: 282 EFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDG 407
+FG +++++L D +G +Y + + A A + L+G
Sbjct: 233 QFGHVEDVYLMRDEYRQ-SRGCGFVKYSSKETAMAAIDGLNG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV +V A E + F + G + + L D+RTG +G +Y T K A A AL
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Score = 31.5 bits (68), Expect = 0.56
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Frame = +3
Query: 129 AERGNRGXYDSLAXEGDSGTPXPXRSVEG---------WILFVSNVHEEAQEXDXXXQFS 281
A+R R ++ + G +G P R +G + LFV +++++A E + F
Sbjct: 174 ADRAIRALHNQITLPGGTG-PVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFL 232
Query: 282 EFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDG 407
+FG +++++L D +G +Y + + A A + L+G
Sbjct: 233 QFGHVEDVYLMRDEYRQ-SRGCGFVKYSSKETAMAAIDGLNG 273
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/87 (25%), Positives = 41/87 (47%)
Frame = +3
Query: 180 SGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFE 359
S +P S L+VS + E F +FG + ++++ +D+ KG+A
Sbjct: 65 SSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLR 124
Query: 360 YXTYKQAAXAREALDGADILGQXISVD 440
Y T ++A A + + G + G+ I V+
Sbjct: 125 YETEEEAMKAIQGMHGKFLDGRVIFVE 151
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L+V N+H E D F FG ++ + + D TG KG+ ++ + A A
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLN 345
Query: 402 DGADILGQXISV 437
+I G+ I V
Sbjct: 346 GQLEIAGRAIKV 357
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV N+ F E G++ + D TG +GY Y + + A E+L
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 402 DGADILGQXISVD 440
DG ++ G+ I V+
Sbjct: 239 DGFELEGRAIRVN 251
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/99 (20%), Positives = 38/99 (38%)
Frame = +3
Query: 171 EGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYA 350
+G S P +V + F N+ +F + + + +R TG +G+A
Sbjct: 71 DGASAVLDPPAAVNTKLYF-GNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFA 129
Query: 351 LFEYXTYKQAAXAREALDGADILGQXISVDWCFVKGPTK 467
+ + LDG + LG+ + V++ P K
Sbjct: 130 FVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNK 168
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV + E FSEFG++ N+ + + RT GY + + + A A EA+
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 402 DG 407
+G
Sbjct: 120 NG 121
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 36.7 bits (81), Expect = 0.015
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+ V N+ E +FS FGEI + L D KGYA ++ + A A E +
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 402 DGADILGQXISVD 440
D G+ I +D
Sbjct: 102 DRRMYNGRMIYID 114
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = +3
Query: 210 EGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXA 389
EG LF+ N+ E + + F FG + + + +D+ TG K + Y + A A
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNA 406
Query: 390 REALDGADILGQXISV 437
+ ++G + G+ + V
Sbjct: 407 IDMMNGRHLGGKKLKV 422
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV + + F+ FGE+ + DR TG +G+ + A A + +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 402 DGADILGQXISVD 440
DG ++ G+ I V+
Sbjct: 97 DGKELNGRQIRVN 109
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV + + F+ FGE+ + DR TG +G+ + A A + +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 402 DGADILGQXISVD 440
DG ++ G+ I V+
Sbjct: 97 DGKELNGRQIRVN 109
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 36.3 bits (80), Expect = 0.020
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+LFV +H + + S++G +K I +R +G KGY E+ AA +E
Sbjct: 203 MLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEG 262
Query: 399 LDG 407
++G
Sbjct: 263 MNG 265
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 35.9 bits (79), Expect = 0.026
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +3
Query: 225 FVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALD 404
FV + + D FS+FG++ + + DR +G +G+ + K A E ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 405 GADILGQXISVD 440
G ++ G+ I+V+
Sbjct: 69 GKELDGRVITVN 80
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 35.9 bits (79), Expect = 0.026
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +3
Query: 225 FVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALD 404
FV + + D FS+FG++ + + DR +G +G+ + K A E ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 405 GADILGQXISVD 440
G ++ G+ I+V+
Sbjct: 69 GKELDGRVITVN 80
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 35.9 bits (79), Expect = 0.026
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +3
Query: 225 FVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALD 404
FV + + D FS+FG++ + + DR +G +G+ + K A E ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 405 GADILGQXISVD 440
G ++ G+ I+V+
Sbjct: 69 GKELDGRVITVN 80
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LF+ + + F+ FG++ + + +DR TG +G+ + A A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 402 DGADILGQXISVD 440
DG ++ G+ I V+
Sbjct: 97 DGKELNGRHIRVN 109
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LF+ + + F+ FG++ + + +DR TG +G+ + A A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 402 DGADILGQXISVD 440
DG ++ G+ I V+
Sbjct: 97 DGKELNGRHIRVN 109
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 35.9 bits (79), Expect = 0.026
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +3
Query: 225 FVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALD 404
F S++ E+ + + FS+ GE+ +H+ DR TG +G+A + + A L
Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEAL---QLS 542
Query: 405 GADILGQXISVD 440
G++I G I V+
Sbjct: 543 GSEIGGGNIHVE 554
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.9 bits (79), Expect = 0.026
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 1/136 (0%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV ++ + A E D F GE+ + + + +T KG A + T +QA A + L
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 402 DGADILGQXISVDWCFVKGPTKSHXKRRXK*CNLVTIXLSHXKLXNI-LEXXRDCXCISN 578
I G+ C V + C + T KL + +E D + +
Sbjct: 276 KSPMINGKK-----CGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVED 330
Query: 579 TAELSMGMGALFLXFN 626
+ ++M G FL F+
Sbjct: 331 SNNVNMNRGYAFLEFS 346
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 35.5 bits (78), Expect = 0.034
Identities = 16/72 (22%), Positives = 36/72 (50%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L V N+ + + + F FG ++++++ D +G +G+A E+ A A+ ++
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 402 DGADILGQXISV 437
+ G+ I+V
Sbjct: 109 NRRSFAGREITV 120
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 35.5 bits (78), Expect = 0.034
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFVS + F+ FG++ + + DR +G KG+ Y T + A A+ +
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 402 DGADILGQXISVD 440
+ + G I VD
Sbjct: 96 NAKFLDGWVIFVD 108
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/86 (22%), Positives = 36/86 (41%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV ++ E + FS F + + D++TG +G+ + + A A +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 402 DGADILGQXISVDWCFVKGPTKSHXK 479
+G + + I +W KG T K
Sbjct: 206 NGKWLSSRQIRCNWA-TKGATSGDDK 230
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 225 FVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALD 404
FV + E F+EFGE+ + + +DR TG KG F + T+K R A+D
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKG---FRFVTFKDEDSMRTAID 103
Query: 405 ---GADILGQXIS 434
G ++ G+ I+
Sbjct: 104 RMNGQELDGRNIT 116
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 35.1 bits (77), Expect = 0.045
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Frame = +3
Query: 120 GSAAERGNRGXYDSLAXEGDSGT-PXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEI 296
G A R G Y +GT P + +FV + + D F+EFGEI
Sbjct: 272 GPATPRKTNG-YQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEI 330
Query: 297 KNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISVDW 443
++ + + + GF+ ++ A A E L+G I Q + + W
Sbjct: 331 VSVKIPVGKGCGFV------QFVNRPNAEEALEKLNGTVIGKQTVRLSW 373
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 34.7 bits (76), Expect = 0.060
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+L V + E+A E +FS+ IK++ L D+ T +G+A + + + A A EA
Sbjct: 459 VLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEA 518
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 34.7 bits (76), Expect = 0.060
Identities = 19/86 (22%), Positives = 36/86 (41%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV ++ E + FS F + + D++TG +G+ + + A A +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 402 DGADILGQXISVDWCFVKGPTKSHXK 479
+G + + I +W KG T K
Sbjct: 210 NGKWVSSRQIRCNWA-TKGATFGEDK 234
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 34.3 bits (75), Expect = 0.079
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L+++N+ + E FS+FG++ L D R G +G+A E+ + A A +
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIEFESADSAGRAMLHM 77
Query: 402 DGADILGQXI 431
DG ++GQ I
Sbjct: 78 DGR-LIGQKI 86
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 34.3 bits (75), Expect = 0.079
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+++ + +A E D GE+ + + ++ +G KGYA + + AA A + L
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 402 DGADILGQXI 431
+ D G+ I
Sbjct: 154 NNTDFRGKRI 163
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 34.3 bits (75), Expect = 0.079
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+FV + E Q F +FGEI + D+ TG KGY + T+K+A A A
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYG---FVTFKEAEAAMRA 79
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 34.3 bits (75), Expect = 0.079
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L+V ++ E E D F +G+I I + R G+A Y ++A A+EAL
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSR------GFAFIYYRHVEEAVAAKEAL 73
Query: 402 DGADILG 422
GA++ G
Sbjct: 74 QGANLNG 80
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/82 (23%), Positives = 40/82 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L+V + + D +FS+FG+I++ +R+T F+ Y + + A +++
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDD-------ALQAKSM 304
Query: 402 DGADILGQXISVDWCFVKGPTK 467
+G + G + VD+ + P K
Sbjct: 305 NGKPMGGSFLRVDFLRSQAPKK 326
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 34.3 bits (75), Expect = 0.079
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+LFV ++ ++ D FS FG + + + D +TG YA E+ + A
Sbjct: 244 VLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFK 303
Query: 399 LDGADILGQXISVDW 443
+D A I + I VD+
Sbjct: 304 MDNALIDDRRIHVDF 318
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 34.3 bits (75), Expect = 0.079
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + + D FSEFGEI ++ + + + GF+ ++ A A E L
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFV------QFVNRPNAEEALEKL 361
Query: 402 DGADILGQXISVDW 443
+G I Q + + W
Sbjct: 362 NGTVIGKQTVRLSW 375
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 34.3 bits (75), Expect = 0.079
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 276 FSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISV 437
F FG+I + + LDR +G +G+ Y + + A A +A+ ++ G+ I V
Sbjct: 56 FGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGV 109
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + E + F ++GEI + + DR+TG +G F + TY ++ + +
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRG---FGFVTYADSSVVDKVI 100
Query: 402 -DGADILGQXISVDWCFVKGPTKSHXKRRXK 491
D I+G+ + + +G S+ + K
Sbjct: 101 QDNHIIIGKQVEIKRTIPRGSMSSNDFKTKK 131
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEY 362
+FV + + + F +FGE+K + D TG +G+ Y
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTY 178
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+++ NV E FS GEIK I + LD+ T G+ + + + A + +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 402 DGADILGQXISV--DWCFVKG 458
G + + I V DW F +G
Sbjct: 96 SGTILDDRPIRVDFDWGFQEG 116
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.5 bits (73), Expect = 0.14
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Frame = +3
Query: 96 GFGNEAGGG------SAAER----GNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHE 245
GFG G G SAA R G YD+ A G P R + G +FV + +
Sbjct: 192 GFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTT-RGI-GNKIFVGRLPQ 249
Query: 246 EAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXA-REALDGADILG 422
EA D F FG I++ ++ D + G+ F + T+ + A R A +I G
Sbjct: 250 EASVDDLRDYFGRFGHIQDAYIPKDPKR---SGHRGFGFVTFAENGVADRVARRSHEICG 306
Query: 423 QXISVD 440
Q +++D
Sbjct: 307 QEVAID 312
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV+ + E D F +GEI ++++ D + +G + T+ A + +
Sbjct: 93 IFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIG---FITFSSADSVEDLM 149
Query: 402 -DGADILGQXISVD 440
D D+ G ++VD
Sbjct: 150 EDTHDLGGTTVAVD 163
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + + + D FS+FGE+ ++ + + + GF+ ++ K A A E+L
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFV------QFADRKSAEDAIESL 376
Query: 402 DGADILGQXISVDW 443
+G I + + W
Sbjct: 377 NGTVIGKNTVRLSW 390
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + + + F +FGE+ ++ + +R GF+ +Y A A L
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFV------QYANKASAEHALSVL 315
Query: 402 DGADILGQXISVDW 443
+G + GQ I + W
Sbjct: 316 NGTQLGGQSIRLSW 329
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSE-FGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+FV ++ E + F +G +K + LDR TG KGY + + A
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 399 LDG 407
++G
Sbjct: 216 MNG 218
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L++ + E FS F + + ++ TG +GY + + A A A+
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 402 DGADILGQXISVD 440
+G ++ G ISV+
Sbjct: 93 NGQELNGFNISVN 105
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 31.9 bits (69), Expect = 0.42
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +3
Query: 195 PXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYK 374
P SVE +LFV+N+ + + D F+ GE+ +I L ++ G GY E+ +
Sbjct: 238 PPNSVEE-VLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASAD 295
Query: 375 QAAXAREALDGADILGQXISVD 440
+ A E +G + I +D
Sbjct: 296 ETKKALENKNGEYLHDHKIFID 317
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 31.9 bits (69), Expect = 0.42
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = +3
Query: 186 TPXPXRSVEGWI-LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEY 362
TP +EG +FV + E FG +K L DR TG KGYA Y
Sbjct: 348 TPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 407
Query: 363 XTYKQAAXAREALDGADILGQXISV 437
A AL+G + + ++V
Sbjct: 408 QDLSVTDIACAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 31.9 bits (69), Expect = 0.42
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = +3
Query: 186 TPXPXRSVEGWI-LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEY 362
TP +EG +FV + E FG +K L DR TG KGYA Y
Sbjct: 348 TPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 407
Query: 363 XTYKQAAXAREALDGADILGQXISV 437
A AL+G + + ++V
Sbjct: 408 QDLSVTDIACAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 31.9 bits (69), Expect = 0.42
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = +3
Query: 186 TPXPXRSVEGWI-LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEY 362
TP +EG +FV + E FG +K L DR TG KGYA Y
Sbjct: 348 TPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 407
Query: 363 XTYKQAAXAREALDGADILGQXISV 437
A AL+G + + ++V
Sbjct: 408 QDLSVTDIACAALNGIKMGDKTLTV 432
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+FV + E + F +FGEI + D+ +G KGY + T+++A AR A
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYG---FVTFREAEAARSA 70
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+FV + E + F +FGEI + D+ +G KGY + T+++A AR A
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYG---FVTFREAEAARSA 70
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+FV + E + F +FGEI + D+ +G KGY + T+++A AR A
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYG---FVTFREAEAARSA 70
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 137 PFCSTASTGFVAKTTTFSLTCLLLKSSD--CP 48
PFC+T TG+++ T CL+LK D CP
Sbjct: 152 PFCATCWTGYISTTINDGPGCLMLKCPDPSCP 183
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+++ NV E + + G + ++H+ D+ T KG+A EY T + A A +
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLF 68
Query: 402 DG 407
G
Sbjct: 69 SG 70
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L++ N+ + E +F+EFG+I ++ + D +GYA + + A A E +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 402 DG 407
+G
Sbjct: 262 NG 263
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + + + F +GEI+ + +D+ TG KGY + T K AREAL
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRK---GAREAL 466
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 31.5 bits (68), Expect = 0.56
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+FV + E Q F ++GEI + D+ TG KGY + T++ AR A
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYG---FVTFRDPEAARRA 81
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 31.1 bits (67), Expect = 0.73
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 213 GWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAR 392
G L++SN+ D F+E GE+K ++ D R+G KG A Y A A
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALAAV 143
Query: 393 EALDGADILGQXISVD 440
+ + + G+ + ++
Sbjct: 144 KKYNDVQLDGKPMKIE 159
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 31.1 bits (67), Expect = 0.73
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 213 GWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAR 392
G L++SN+ D F+E GE+K ++ D R+G KG A Y A A
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALAAV 79
Query: 393 EALDGADILGQXISVD 440
+ + + G+ + ++
Sbjct: 80 KKYNDVQLDGKPMKIE 95
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 31.1 bits (67), Expect = 0.73
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 213 GWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAR 392
G L++SN+ D F+E GE+K ++ D R+G KG A Y A A
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSRRGDALAAV 145
Query: 393 EALDGADILGQXISVD 440
+ + + G+ + ++
Sbjct: 146 KKYNDVQLDGKPMKIE 161
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 31.1 bits (67), Expect = 0.73
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 14/131 (10%)
Frame = +3
Query: 66 KEKARKRKGRGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWI-------L 224
K+ A K G E G AE + G E ++ P + + W +
Sbjct: 221 KKDASKDDVAGKKEEDGSDETAEINSNGKRK--LPEPETEKKEPNKPPDSWFELKVNPHI 278
Query: 225 FVSNVHEEAQEXDXXXQFSEFGEIKN-------IHLNLDRRTGFLKGYALFEYXTYKQAA 383
+V+ + ++ + FS+ G IK I L D+ TG LKG AL Y
Sbjct: 279 YVNGLPDDVTIEEVAEVFSKCGIIKEDDTGKPRIKLYSDKATGKLKGDALISYMKEPSVD 338
Query: 384 XAREALDGADI 416
A + LDGA +
Sbjct: 339 LAIKILDGAPL 349
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LF+ + E FS+ G++ + +DR + KG+ + + +A A
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 402 DGADILGQXISVDWCFVK 455
+G + G+ I VD+ K
Sbjct: 96 NGQQLNGRTIFVDYAKAK 113
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +3
Query: 69 EKARKRKGRGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEG 215
E+ R GRGFG GGG RG R + + G+S P P G
Sbjct: 1083 EQTFDRGGRGFGGRRGGG---RRGGRDQFGRGSSFGNSEDPAPWSKPSG 1128
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/89 (21%), Positives = 40/89 (44%)
Frame = +3
Query: 75 ARKRKGRGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQ 254
A ++ +G + G + G G S++ +G+S +FV + +
Sbjct: 290 ATPKRAAAYGQQNGSQALTLAGGHGGNGSMS-DGESNNST---------IFVGGLDADVT 339
Query: 255 EXDXXXQFSEFGEIKNIHLNLDRRTGFLK 341
E D FS+FGE+ ++ + + + GF++
Sbjct: 340 EEDLMQPFSDFGEVVSVKIPVGKGCGFVQ 368
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 183 GTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEY 362
G+P P S + +FV + E + F++FG I ++ + D RT +G+ Y
Sbjct: 25 GSPGPSNSKK---IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY 81
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 183 GTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEY 362
G+P P S + +FV + E + F++FG I ++ + D RT +G+ Y
Sbjct: 98 GSPGPSNSKK---IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY 154
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 207 VEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGY 347
+E LF+ + E E F FGE+ + DR TG +G+
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGF 49
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 183 GTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEY 362
G+P P S + +FV + E + F++FG I ++ + D RT +G+ Y
Sbjct: 98 GSPGPSNSKK---IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY 154
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 207 VEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGY 347
+E LF+ + E E F FGE+ + DR TG +G+
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGF 49
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 30.7 bits (66), Expect = 0.97
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = +3
Query: 195 PXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYK 374
P V + V+N+ + E + FS+ GE+ I++ + KGY ++ T
Sbjct: 230 PESDVTCTTISVANLDQNVTEEELKKAFSQLGEV--IYVKIPAT----KGYGYVQFKTRP 283
Query: 375 QAAXAREALDGADILGQXISVDW 443
A A + + G I Q + + W
Sbjct: 284 SAEEAVQRMQGQVIGQQAVRISW 306
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +3
Query: 276 FSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXIS 434
FS+ GE+ ++ + ++ TG +GY E+ ++ A + +G + G ++
Sbjct: 44 FSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELT 96
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/62 (20%), Positives = 31/62 (50%)
Frame = +3
Query: 219 ILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+L++ + E + FS+FG +K + + +++TG K + ++ + A A A
Sbjct: 61 VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120
Query: 399 LD 404
++
Sbjct: 121 MN 122
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 30.7 bits (66), Expect = 0.97
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + E FG ++ +L DR TG KGYA Y A AL
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 402 DGADILGQXISV 437
+G + + ++V
Sbjct: 437 NGIKMGDKTLTV 448
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/87 (20%), Positives = 37/87 (42%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV ++ E + FS + + + D++TG +G+ + + A A + +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 402 DGADILGQXISVDWCFVKGPTKSHXKR 482
G + + I +W KG T K+
Sbjct: 201 TGKWLGSRQIRCNWA-TKGATSGEDKQ 226
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/80 (21%), Positives = 34/80 (42%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
L+V N+ F FG + ++ ++ + +TG +G + A A +L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 402 DGADILGQXISVDWCFVKGP 461
DG ++ G+ + V + P
Sbjct: 170 DGTEVGGREMRVRYSVDMNP 189
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 204 SVE-GWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQA 380
S+E G L++SN+ D FSE G++K ++ D R+G KG A + A
Sbjct: 103 SIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKGTAEVVFSRRGDA 161
Query: 381 AXAREALDGADILGQXISVD 440
A + + + G+ + ++
Sbjct: 162 LAAVKRYNNVQLDGKLMKIE 181
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +3
Query: 225 FVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALD 404
FV + + D FS+FG++ + + DR +G +G+ + K A E ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 405 GA 410
G+
Sbjct: 69 GS 70
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/78 (21%), Positives = 34/78 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV N++ ++ + F FGEI++++ R G+ + Y + A A AL
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRSLYTACKSR-----GFVMISYYDIRAAHAAMRAL 241
Query: 402 DGADILGQXISVDWCFVK 455
+ + + + + K
Sbjct: 242 QNTLLRKRTLDIHFSIPK 259
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/78 (21%), Positives = 34/78 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV N++ ++ + F FGEI++++ R G+ + Y + A A AL
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRSLYTACKSR-----GFVMISYYDIRAAHAAMRAL 254
Query: 402 DGADILGQXISVDWCFVK 455
+ + + + + K
Sbjct: 255 QNTLLRKRTLDIHFSIPK 272
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/73 (21%), Positives = 36/73 (49%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV + + E FS++G++ + + +D+ KG+A + + ++A A L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 402 DGADILGQXISVD 440
+ + G+ + +D
Sbjct: 83 NAQLVDGRVVILD 95
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + E + F +FGEI + D+ TG KGY + T++++ A A+
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG---FVTFRESDSATRAV 75
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
+FV + E + F +FGEI + D+ TG KGY + T++++ A A+
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG---FVTFRESDSATRAV 75
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/78 (17%), Positives = 34/78 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV N++ ++ + F ++G+I+ ++ R G+ + Y + A A +L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHR-----GFVMISYYDIRSARMAMRSL 224
Query: 402 DGADILGQXISVDWCFVK 455
+ + + + + K
Sbjct: 225 QNKPLRRRKLDIHFSIPK 242
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/78 (17%), Positives = 34/78 (43%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV N++ ++ + F ++G+I+ ++ R G+ + Y + A A +L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHR-----GFVMISYYDIRSARMAMRSL 224
Query: 402 DGADILGQXISVDWCFVK 455
+ + + + + K
Sbjct: 225 QNKPLRRRKLDIHFSIPK 242
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
+FV + E Q F ++G+I + D+ TG KGY + T++ AR A
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYG---FVTFRDPEAARRA 81
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LFV V E F +FGE+ + + DR TG +G F + T+ +A A + L
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRG---FGFVTFADSAVAEKVL 124
Query: 402 D 404
+
Sbjct: 125 E 125
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 29.9 bits (64), Expect = 1.7
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +3
Query: 186 TPXPXRSVEGWILFVSNVHEEAQEXDXXXQF-SEFGEIKNIHLNLDRRTGFLKGYALFEY 362
TP P V + LFV+N+ EA+ F ++ G + + + GY +
Sbjct: 182 TPSP---VPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSF 238
Query: 363 XTYKQAAXAREALDGADILGQXI 431
T KQA A G D LG+ I
Sbjct: 239 KTKKQAEAALIEFQGKDFLGRPI 261
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 90 GRGFGNEAGGGSAAERGNRG 149
GRGFG GGG +RG RG
Sbjct: 20 GRGFGGGRGGGRGRDRGPRG 39
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 90 GRGFGNEAGGGSAAERGNRG 149
GRGFG GGG +RG RG
Sbjct: 20 GRGFGGGRGGGRGRDRGPRG 39
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 90 GRGFGNEAGGGSAAERGNRG 149
GRGFG GGG +RG RG
Sbjct: 20 GRGFGGGRGGGRGRDRGPRG 39
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 90 GRGFGNEAGGGSAAERGNRG 149
GRGFG GGG +RG RG
Sbjct: 20 GRGFGGGRGGGRGRDRGPRG 39
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 69 EKARKRKGRGFGNEAGGGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWI 221
++ R GRG G+ GGG RG G + D G P +S G +
Sbjct: 76 DRGRGYSGRGDGHGRGGGGDRGRGYSGRGRGFVQDRDGGWVNPGQSSGGHV 126
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/109 (21%), Positives = 43/109 (39%)
Frame = +3
Query: 117 GGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEI 296
G +A+++G G DS T +FV + + FS++GEI
Sbjct: 230 GPAASKKGVTGQRDSYQSSAAGVTTD--NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEI 287
Query: 297 KNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISVDW 443
++ + +R GF+ ++ A A L+G + G + + W
Sbjct: 288 VHVKIPAGKRCGFV------QFSEKSCAEEALRMLNGVQLGGTTVRLSW 330
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 29.5 bits (63), Expect = 2.2
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Frame = +3
Query: 36 NMVNRAIARLKEKARKRKGRGFGNEAGGGSA-----AERGNRGXYDSLAXEGDSGTPXPX 200
N+ ++A+ ++K + +K G ++ A AE G D E D+ P
Sbjct: 588 NVEEESLAK-RQKRKSQKEVDLGGQSATVPATKNVKAENGKTADSDKEETE-DAKPLKPK 645
Query: 201 RSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQA 380
+ F+SN+ +AQE D F + G + +I + + TG +G A ++ +
Sbjct: 646 VYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHL 705
Query: 381 AXA 389
A A
Sbjct: 706 AAA 708
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 29.5 bits (63), Expect = 2.2
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Frame = +3
Query: 36 NMVNRAIARLKEKARKRKGRGFGNEAGGGSA-----AERGNRGXYDSLAXEGDSGTPXPX 200
N+ ++A+ ++K + +K G ++ A AE G D E D+ P
Sbjct: 588 NVEEESLAK-RQKRKSQKEVDLGGQSATVPATKNVKAENGKTADSDKEETE-DAKPLKPK 645
Query: 201 RSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQA 380
+ F+SN+ +AQE D F + G + +I + + TG +G A ++ +
Sbjct: 646 VYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHL 705
Query: 381 AXA 389
A A
Sbjct: 706 AAA 708
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 137 PFCSTASTGFVAKTTTFSLTCLLLKSSD 54
PFC+T TG+++ T CL+L+ D
Sbjct: 157 PFCTTCWTGYISTTINDGPGCLMLRCPD 184
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 29.1 bits (62), Expect = 3.0
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +3
Query: 156 DSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNI-----HLNLD 320
D+ E ++ P EG I FV N+ ++ + F +FG I+N+ H ++
Sbjct: 146 DTKPPEEETRNPQQEFRQEGKI-FVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVE 204
Query: 321 RRTGFLKGYALFEYXTYKQAAXAREALDGADILGQXISV 437
+ GF G+ + Y K A A E DG + G+ ++V
Sbjct: 205 KNAGF--GFII--YAAEKSAMKAVE-FDGVEFHGRILTV 238
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXA 389
+FV + E F +GEI+ + +D+ TG KG+ + T K A A
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXA 389
+FV + E F +GEI+ + +D+ TG KG+ + T K A A
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 225 FVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGF-LKGYALFEY 362
+V N+ + +E D FS+FG++ IH N+ F L Y F+Y
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDV--IHSNVRFSFHFSLIDYEYFDY 55
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNL----DRRTGFLKGYALFEYXTYKQAAXA 389
+FV ++ E + FS F + + + D++TG +G+ + + A A
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 390 REALDGADILGQXISVDWCFVKGPTKSHXK 479
++G + + I +W KG T K
Sbjct: 210 INEMNGKWVSSRQIRCNWA-TKGATFGEDK 238
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXA 389
+FV + E + F +FGEI + D+ TG KGY + A A
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRA 74
>At1g09890.1 68414.m01113 expressed protein ; expression supported
by MPSS
Length = 633
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 132 ERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHL 311
E NRG +D + G SGT ++G V +EE E ++ E K + L
Sbjct: 50 EEVNRGYWDLVW--GGSGTAGGFDVIKGSNFEVIVKNEEQIELSFTRKWDPSQEGKAVPL 107
Query: 312 NLDRRTGFLKGYA-LFEYXTYK 374
N+D+R L G + + Y Y+
Sbjct: 108 NIDKRFVMLSGSSGFYTYAIYE 129
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGY 347
LF+ + + E FS FGE+ + DR TG +G+
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGF 49
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGY 347
LF+ + + E FS FGE+ + DR TG +G+
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGF 49
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXA 389
+FV + + + F +GEI + +D+ TG KG+ + T K A A
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAA 220
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 276 FSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREA 398
F FGEI ++++ DR T +GY + T+K A A A
Sbjct: 33 FKRFGEIIHVNVVCDRETDRSQGYG---FVTFKDAESATRA 70
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
++V N+ E + +F FG ++++ + RR GYA ++ + A A AL
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVA--RRP---PGYAFLDFEDPRDARDAIRAL 58
Query: 402 DG 407
DG
Sbjct: 59 DG 60
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/90 (22%), Positives = 33/90 (36%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXAREAL 401
LF ++ E + F+ F + D+RTG KGY + A A + +
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 402 DGADILGQXISVDWCFVKGPTKSHXKRRXK 491
+G + + I + K T R K
Sbjct: 199 NGKYVGNRPIKLRKSSWKERTDQEAAERQK 228
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 51 AIARLKEKARKRKGRGFGNEAGGGSAAERGNRGXY 155
A+ +KE R+R G G+ GGGS +G Y
Sbjct: 204 AVLFVKEVLRRRDGFGYSVVGGGGSEGRKGGPVGY 238
>At2g17740.1 68415.m02055 DC1 domain-containing protein
Length = 248
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 42 VNRAIARLKEKARKRKGRGFGNEAG-GGSAAERGNRGXYDSLA 167
++ +A +EK++K GRG G E G GG+ RG LA
Sbjct: 170 LHSCVAEEEEKSKKG-GRGRGGEGGSGGNGVNRGRSSANSELA 211
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXA 389
LFV+N+ + Q D F + GE+ ++ L ++ + G G+ E+ + +A A
Sbjct: 249 LFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQ-GKHAGWGFVEFASANEAEKA 303
>At5g64670.1 68418.m08127 ribosomal protein L15 family protein
Length = 281
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 72 KARKRKGRGFGNEAGGGSAAERGNRG 149
K + RKGRG G +G G A RG++G
Sbjct: 76 KLKTRKGRGIG--SGKGKTAGRGHKG 99
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 210 EGWILFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEY 362
EG LF+ N+ E + + F FG + + + +D+ TG K + +
Sbjct: 346 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/56 (23%), Positives = 23/56 (41%)
Frame = +3
Query: 222 LFVSNVHEEAQEXDXXXQFSEFGEIKNIHLNLDRRTGFLKGYALFEYXTYKQAAXA 389
+FV N+ D F +FG++ + ++ + G KGY + Y A
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRA 69
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/75 (22%), Positives = 32/75 (42%)
Frame = +3
Query: 117 GGSAAERGNRGXYDSLAXEGDSGTPXPXRSVEGWILFVSNVHEEAQEXDXXXQFSEFGEI 296
G +A+++G G DS T +FV + + FS++GEI
Sbjct: 230 GPAASKKGVTGQRDSYQSSAAGVTTD--NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEI 287
Query: 297 KNIHLNLDRRTGFLK 341
++ + +R GF++
Sbjct: 288 VHVKIPAGKRCGFVQ 302
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,392,673
Number of Sequences: 28952
Number of extensions: 187218
Number of successful extensions: 714
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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