Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0529
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 29 3.9
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 29 3.9
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 29 3.9
06_03_0355 + 19822110-19824491 29 5.2
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 29 5.2
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546... 28 6.9
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522... 28 6.9
01_06_0241 - 27813076-27813622,27813695-27814125 28 6.9
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 28 9.1
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +3
Query: 90 KTSPRSPQXLKSQLEGFNTSCLRDVDTNEKIVL 188
+T+ + + L+S+L+ NT CL + + N+K+++
Sbjct: 46 ETNSSAVKDLQSKLDAVNTECLAEKEKNKKLII 78
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 177 KIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 296
K VLPS E++A ++ S GIE+ + + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 20/113 (17%)
Frame = +3
Query: 159 DVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKD-------- 314
+++ K+ + E K ++SL +E SSQ TE + + +KD
Sbjct: 1446 NINIKRKLDASAKEKEELTKEKQSLSKQLEDLKSSQKTTTENSNEQAIKEKDFRIQTLEK 1505
Query: 315 AIEAEKEKNK------------FLNGIENFDPTKLKHTETCEKNPLPTKDVIE 437
+E E++ NK F I+N + + + E+ EK+ K+VIE
Sbjct: 1506 VLEKERDDNKKEKAFRRRNEKVFTTAIQNMNQERKQVEESIEKHRQAVKEVIE 1558
>06_03_0355 + 19822110-19824491
Length = 793
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 153 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTET---QEKNPLPDKDAIE 323
+ +V +++LP+ E+VATE + +E D+ L T +E +P+ D E
Sbjct: 203 VEEVSVTHEVMLPNYEEVATEGDGDTAMAAVEN-DAGSLAETVVMTHEEFVAVPEDDEEE 261
Query: 324 AEKEKNKFLNGI 359
A+ ++ G+
Sbjct: 262 ADGDEENDATGL 273
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 260 EPAEAHRDSGEEPASGQRRYRSGEGKEQ 343
+P A D E +G RR+RSG G++Q
Sbjct: 206 DPRAADDDHAEAARNGVRRWRSGSGQQQ 233
>03_06_0340 +
33252677-33252864,33253086-33254442,33254565-33254667,
33256081-33256171,33257208-33257300,33258316-33258471,
33258583-33258655
Length = 686
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +3
Query: 21 YPLPHQKYIDSEWPAP*VTLPP*KTSP---RSPQXLKSQLEGFNTSCLRD 161
YP P Q Y + P V PP +P R P L+ L CL D
Sbjct: 625 YPYPAQGYYQGPYQGPPVMAPPQYAAPPPRRQPSFLEGCLAALCCCCLID 674
>02_05_0599 -
30251708-30251815,30251864-30251984,30252068-30252215,
30252303-30252480,30252587-30252625,30252704-30252799,
30252879-30253030,30253336-30253722,30253836-30253940,
30254083-30254098
Length = 449
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 287 GEEPASGQRRYRSGEGKEQIPERHRELR--SH*AEAHG-DVRKEPAP 418
GEEPA R+G G P +HRE + SH + +G ++R+ P
Sbjct: 6 GEEPAHDFLSLRAGGGSSSPPFQHREEQHSSHSSRGYGMEIRRSLRP 52
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 260 EPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRS-H*AEAHGDVRKEPAPHK 424
EP H + ++ R +R+ ++ + HR RS H A + +V + H+
Sbjct: 23 EPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 306 PEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGDS 148
P++ SSP AS+ S R R ++SGS + + + H + G S
Sbjct: 33 PDSASSPSPSSASSPSRSPDRRSRSRSSGSKRRKASSSSRRHRHHHHKSSGRS 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,113,491
Number of Sequences: 37544
Number of extensions: 412711
Number of successful extensions: 1316
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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