BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0529 (750 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 93 3e-19 SB_44005| Best HMM Match : CUE (HMM E-Value=0.38) 35 0.081 SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21) 33 0.33 SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57 SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 31 0.76 SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 30 2.3 SB_13773| Best HMM Match : TolA (HMM E-Value=0.042) 29 3.0 SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0 SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0 SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 29 5.3 SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3 SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032) 29 5.3 SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 29 5.3 SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 28 7.0 SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 28 7.0 SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 9.3 SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 28 9.3 SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 28 9.3 >SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) Length = 750 Score = 92.7 bits (220), Expect = 3e-19 Identities = 50/110 (45%), Positives = 69/110 (62%), Gaps = 2/110 (1%) Frame = +3 Query: 120 KSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNP 299 +++++ F S L+ V+T EK LP+ + +A EK + + F G+E F ++LKH ET EKNP Sbjct: 451 RAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNP 509 Query: 300 LPDKDAIEAE--KEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 443 LPD I AE E + + FD +KLKH ET EK +PTKDVIE E Sbjct: 510 LPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559 Score = 89.4 bits (212), Expect = 3e-18 Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Frame = +3 Query: 120 KSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFD--GIEKFDSSQLKHTETQEK 293 +++++ F+ S L+ V+T EK LPSA + E + L D + FD+S+LKH E QEK Sbjct: 640 RAEVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEK 699 Query: 294 NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 452 NPLP KD I E + + ++ FD +KLKH +T EKNPLP I QEK++ Sbjct: 700 NPLPTKDDITTESTETR--AEVKTFDHSKLKHVQTEEKNPLPDAKTIAQEKAS 750 Score = 84.6 bits (200), Expect = 8e-17 Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 2/109 (1%) Frame = +3 Query: 123 SQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKN 296 S +E F + L+ V+T EK LP A+++ E + L D E KFD+S+LKH ET+EK Sbjct: 489 SGVEVFQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKV 548 Query: 297 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 443 +P KD IEAE ++ +++FD +KLKH T EKNPLPT + +E Sbjct: 549 VMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVVTQEKNPLPTPQTLHEE 595 Score = 79.4 bits (187), Expect = 3e-15 Identities = 43/110 (39%), Positives = 68/110 (61%), Gaps = 2/110 (1%) Frame = +3 Query: 120 KSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNP 299 +S++ F+TS L+ V+T EK+V+P+ + + E ++ FD S+LKH TQEKNP Sbjct: 528 RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVVTQEKNP 585 Query: 300 LPDKDAIEAEK-EKNK-FLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 443 LP + E KNK + + +FD TKLKH T EK+ +P+++ I++E Sbjct: 586 LPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635 Score = 72.9 bits (171), Expect = 2e-13 Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 2/96 (2%) Frame = +3 Query: 165 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 344 DT ++I P +E + K + KFD++ LKH +T+EKN LP + I+ E + ++ Sbjct: 389 DTPQQI-WPGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDE 447 Query: 345 FLN--GIENFDPTKLKHTETCEKNPLPTKDVIEQEK 446 F + +++F+ +KL+H ET EKN LPTKD I EK Sbjct: 448 FPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK 483 >SB_44005| Best HMM Match : CUE (HMM E-Value=0.38) Length = 761 Score = 34.7 bits (76), Expect = 0.081 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 2/110 (1%) Frame = +3 Query: 102 RSPQXLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 281 R+P SQ +G ++ CL D+ S+ + SL D Q K E Sbjct: 282 RAPASFDSQSQGSDSDCLNSQDSQTSRTSNSSGKRKKLTPEDSLRRKQAAQDKKQAKVRE 341 Query: 282 TQEKNPLPDKDAIEAEKEKNKFLNGIEN--FDPTKLKHTETCEKNPLPTK 425 Q K +K EKE++K L + DP+ L T+ C ++P+ +K Sbjct: 342 KQAKQQAQEKK--RQEKERDKLLKKLIKVCLDPS-LIATDPCSEDPILSK 388 >SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21) Length = 900 Score = 32.7 bits (71), Expect = 0.33 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = +3 Query: 159 DVDTNEKIVLPSAEDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 335 DV + P+ A EKT K + DG +EK+ + +T + L D D E+E Sbjct: 341 DVIGKPPAIPPAQVQAAEEKTPKDIIDGLLEKYKEIGSQMADTSADDGLDDDD---VEEE 397 Query: 336 KNKFLNGIENFDPTKLK 386 + L+ + F TK K Sbjct: 398 DDDVLDEADRFRDTKRK 414 >SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 725 Score = 31.9 bits (69), Expect = 0.57 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%) Frame = +3 Query: 192 SAEDVATEKTQ--KSLF--DGIE-KFDSSQLKHTETQEKNPLPDKDAIEAEK-----EKN 341 S+E+VA KT+ +SL D ++ K+ SSQ+ ET++ K ++E+ EK Sbjct: 142 SSEEVAKWKTKLRRSLSKTDALDGKYSSSQIDKLETKQAIKSKKKKRRKSEEKELLGEKV 201 Query: 342 KFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 446 N +N + TK +H++ EKN Q+K Sbjct: 202 DQFNSKKNLNRTKERHSKKMEKNRQDNSKTRSQQK 236 >SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) Length = 1452 Score = 31.5 bits (68), Expect = 0.76 Identities = 20/64 (31%), Positives = 28/64 (43%) Frame = +3 Query: 252 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDV 431 +D Q K E PD+D +E E+E NG+E+ D K + PT DV Sbjct: 839 YDVKQRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDV 895 Query: 432 IEQE 443 Q+ Sbjct: 896 ETQQ 899 >SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) Length = 385 Score = 29.9 bits (64), Expect = 2.3 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +3 Query: 186 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLP 305 L S D EKT D +E+F S +H T +KNPLP Sbjct: 194 LSSRSDHVQEKT-----DRLEQFSSQTGRHINTTKKNPLP 228 >SB_13773| Best HMM Match : TolA (HMM E-Value=0.042) Length = 1558 Score = 29.5 bits (63), Expect = 3.0 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 9/73 (12%) Frame = +3 Query: 153 LRDVDTNEKIVLPSAEDV------ATEKTQKSLFDGIEKFDS---SQLKHTETQEKNPLP 305 ++D+ T E+++ AED A E ++++F+ EK +S + + TE Q+K Sbjct: 1137 MKDLTTEEELIASYAEDAERAAEAAKEYRERTMFEIAEKINSIKEQRRQQTEAQKKKMDE 1196 Query: 306 DKDAIEAEKEKNK 344 + +EAE E+ + Sbjct: 1197 EIRRLEAELEEER 1209 >SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1028 Score = 29.5 bits (63), Expect = 3.0 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 516 LM*VRSICVVHYKFYFCFCTMATLPG 593 L+ V IC VH FY+C C +++ G Sbjct: 55 LVAVLRICSVHLDFYYCTCVWSSMAG 80 >SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 275 Score = 29.1 bits (62), Expect = 4.0 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +3 Query: 270 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEK 407 +HTE + +P P K I+ E +++ + I+ KH+ +CE+ Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCER 257 >SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) Length = 966 Score = 28.7 bits (61), Expect = 5.3 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 290 EEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGDVRKEP 412 EEP+ + +G KE+ E RE R H + V++EP Sbjct: 840 EEPSDEEESEEAGREKEEEEEDQREGRDHNDDEESVVKEEP 880 >SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2916 Score = 28.7 bits (61), Expect = 5.3 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 236 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRS 373 RR +E+ AE H+ EPA + R+ SGE E+ H E++S Sbjct: 35 RREQEIIELKAELHKRDDLEPAGQRHRHDSGESFEE----HEEIKS 76 >SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032) Length = 1293 Score = 28.7 bits (61), Expect = 5.3 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 236 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRS 373 RR +E+ AE H+ EPA + R+ SGE E+ H E++S Sbjct: 11 RREQEIIELKAELHKRDDLEPAGQRHRHDSGESFEE----HEEIKS 52 >SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) Length = 644 Score = 28.7 bits (61), Expect = 5.3 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = +2 Query: 473 VTRKCISLVSPYFNIDVSQIDL 538 + KC L+SPY ++D+ DL Sbjct: 13 IAAKCTQLISPYLDLDIKYFDL 34 >SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) Length = 446 Score = 28.3 bits (60), Expect = 7.0 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = +3 Query: 225 KSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHT--ET 398 KS+F + + + TET+E NP D +AE+ + G + T+ K T ET Sbjct: 276 KSVFKRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTNMET 335 Query: 399 CEKNPL 416 K L Sbjct: 336 LRKEML 341 >SB_16625| Best HMM Match : Death (HMM E-Value=1.5) Length = 528 Score = 28.3 bits (60), Expect = 7.0 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 11/93 (11%) Frame = +3 Query: 207 ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDAIEAEKEKNKFLN 353 A T L DG+ D ++ +H + T E++P DK + L+ Sbjct: 226 ALRDTTHDLLDGLRYSDQAKEEHAKLIPKYHEIMIKTIEQDPTSDKSYKALRDTTHDLLD 285 Query: 354 GIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 452 G+ +FD K +H + K IEQ+ ++ Sbjct: 286 GLRDFDQAKEEHAKLIPKYHKIMIKTIEQDPTS 318 >SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) Length = 3037 Score = 27.9 bits (59), Expect = 9.3 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 1/103 (0%) Frame = +3 Query: 105 SPQXLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTET 284 +P + S+L S LR +D+N + + S D E +K L + + K + Sbjct: 1416 APMNITSRLS--KISPLRALDSNAECAVSSDSDSELEDEKKPLASFCSQVKMHKTKEQQC 1473 Query: 285 QEKNPLPDKDAIEAEKEKNKF-LNGIENFDPTKLKHTETCEKN 410 + LP++ A + KN+ + N L+ ++T EK+ Sbjct: 1474 NVEKTLPEESAQKRTFVKNRTDMASSLNIRRRHLEDSKTLEKS 1516 >SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) Length = 2049 Score = 27.9 bits (59), Expect = 9.3 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +3 Query: 195 AEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEK 332 ++D EKT+ S+ + + DSS T+EK +KD E+ Sbjct: 1546 SDDGTDEKTEDSMQEDAKDLDSSNTASDTTKEKGKNKEKDKTVLER 1591 >SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) Length = 590 Score = 27.9 bits (59), Expect = 9.3 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +2 Query: 257 FEPAEAHRDSGEEPASGQRRYRSGEG 334 FEP E H DSG+E Y EG Sbjct: 266 FEPMEIHDDSGDEDVDSDDDYDDREG 291 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,027,023 Number of Sequences: 59808 Number of extensions: 469312 Number of successful extensions: 1528 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1367 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1511 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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