Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0529
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 38 0.005
At3g57780.1 68416.m06436 expressed protein 31 0.82
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 31 0.82
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 30 1.4
At3g28770.1 68416.m03591 expressed protein 30 1.4
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 3.3
At5g45520.1 68418.m05591 hypothetical protein 29 3.3
At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794... 29 4.4
At2g22795.1 68415.m02704 expressed protein 28 5.8
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 28 5.8
At5g06430.1 68418.m00720 thioredoxin-related contains weak simil... 28 7.6
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 7.6
At1g11790.1 68414.m01353 prephenate dehydratase family protein s... 28 7.6
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Frame = +3
Query: 156 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 335
R+ + NE+ + + E E+ K+ + EK Q+K + +E+N K+ +E +
Sbjct: 744 REKEENERRIKEAREKAELEQRLKATLEQEEK--ERQIKERQEREENERRAKEVLEQAEN 801
Query: 336 KNKFLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQEKSAXXXXXXXXXANVSR 494
+ K +E + +LK T E+N ++ IE E+ A + R
Sbjct: 802 ERKLKEALEQKENERRLKETREKEENKKKLREAIELEEKEKRLIEAFERAEIER 855
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +3
Query: 165 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 344
+ NE+ E E+ K + +K + +LK T +E+N ++AIE E+++ +
Sbjct: 786 EENERRAKEVLEQAENERKLKEALE--QKENERRLKETREKEENKKKLREAIELEEKEKR 843
Query: 345 FLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQEK 446
+ E + +LK E+ + ++ E+E+
Sbjct: 844 LIEAFERAEIERRLKEDLEQEEMRMRLQEAKERER 878
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 31.1 bits (67), Expect = 0.82
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 219 TQKSLFDGIEKFDSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 395
TQ L D + + + TE +E N L D E EKE++K L+ I + + E
Sbjct: 58 TQSKLSDDDDHAVNDSSEKTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPE 117
Query: 396 TCE 404
TCE
Sbjct: 118 TCE 120
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +3
Query: 270 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 443
K +E P P+ + + EK+ FLNG K KNP+P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 198 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKN 341
EDV EK D +++ D Q + ++EK +KD E EKEK+
Sbjct: 642 EDVVQEKDGDQEEDVVQEKDGDQEEDGVSKEKEQEKEKDPKEKEKEKD 689
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +3
Query: 168 TNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKF 347
TNE V E+V K + + EK +S K ET++ L + + KE++
Sbjct: 763 TNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGE 822
Query: 348 LNGIENFDPTKLKHTETCEKN 410
N + + + E EKN
Sbjct: 823 DNKEDKEESKDYQSVEAKEKN 843
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 216 KTQKSLFDGIEKFDSSQLKHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHT 392
KT ++ E+ K +E EK + KDA E + NK L+ EN D K +
Sbjct: 762 KTNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSG 821
Query: 393 ETCEKNPLPTKD 428
E +++ +KD
Sbjct: 822 EDNKEDKEESKD 833
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 276 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 371
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 219 TQKSLFDGIEKFDSSQLKHTET-QEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 395
T K L D +E+ D + +T +E+ ++ + + ++ +N N + K KH E
Sbjct: 575 TDKKLKDLMEREDDQVQNYGQTSKEEKGNVEETGKQEDGDQGDGINEEANLEDGK-KHDE 633
Query: 396 TCEKNPLPTKDVIEQEK 446
E+ L + +V+E+EK
Sbjct: 634 GKEERSLKSDEVVEEEK 650
>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
Domain of Unknown function
Length = 350
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 225 KSLFDGIEKFDSSQLK---HTETQEKNPLPDKDAIEAEKEKNKFL 350
++LF +F S Q+ H E +EK+ LP +A E KEK K L
Sbjct: 252 EALFSLASRFKSLQMMCKTHFEEEEKDLLPMVEAAEMGKEKQKKL 296
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/98 (21%), Positives = 44/98 (44%)
Frame = +3
Query: 156 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 335
++ + EK+ S E ++T EK +SS L+ T+ +E +++ EK
Sbjct: 469 KETEAKEKVESSSQEKNEDKET--------EKIESSFLEETKEKEDETKEKEESSSQEKT 520
Query: 336 KNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 449
+ K +N + + + T+ E + ++ QE+S
Sbjct: 521 EEKETETKDNEESSSQEETKDKENEKIEKEEASSQEES 558
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Frame = +3
Query: 165 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 344
+ NE E E+T++ + EK +SS + TE +E ++++ E+ K+K
Sbjct: 483 EKNEDKETEKIESSFLEETKEKEDETKEKEESSSQEKTEEKETETKDNEESSSQEETKDK 542
Query: 345 FLNGIE-----NFDPTKLKHTETCEKNPLPTKDVIEQEKS 449
IE + + +K TET EK +++ +++++
Sbjct: 543 ENEKIEKEEASSQEESKENETETKEKEESSSQEETKEKEN 582
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = +3
Query: 162 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKN 341
V + E +LP E +T SL FD E QE+ P + ++E EK +
Sbjct: 112 VVSEEDHLLPKKEYFSTAVALGSLKSRASVFDDEDYDEEEEQEEEQAPVEKSLETEKREP 171
Query: 342 KFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 443
L + + + + + +++ + T+DV E+E
Sbjct: 172 VVLKEDKALEYEE-EASILDKEDHMDTEDVQEEE 204
>At5g06430.1 68418.m00720 thioredoxin-related contains weak
similarity to Swiss-Prot:Q9SEU7 thioredoxin M-type 3,
chloroplast precursor (TRX-M3) [Arabidopsis thaliana]
Length = 194
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Frame = -1
Query: 390 CASA*WD--RSSRCRSGICSFPSPLR*RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGS 217
C WD + + S +C F P R GS S S G N R ++ S S
Sbjct: 19 CLKWPWDSNKQPKSSSSVCDFQGPWLFRSMQTIGSIALSSLTSFGQNPNFRPKKKPLSSS 78
Query: 216 SQWQRLQQTEA 184
Q + Q+ A
Sbjct: 79 EQGEAEQRAFA 89
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 264 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 443
QL+ T+ + K P E +K K D K ++ E C P+P + ++E
Sbjct: 413 QLEETDVKRKRNAPGPSPKEPAMKKQK-----SEMDCDKEENAEDCFGEPVPERFIVEMR 467
Query: 444 KS 449
+S
Sbjct: 468 RS 469
>At1g11790.1 68414.m01353 prephenate dehydratase family protein
similar to gi|2392772 and is a member of the PF|00800
Prephenate dehydratase family. ESTs gb|T21562 and
gb|T21062 come from this gene
Length = 392
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 348 GICSFPSPLR*RLCP-EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFH 172
G+ F + R R C E SS R +A + R +K S S + Q+T++ SFH
Sbjct: 23 GLAEFDADKRRRFCLWECSSSASQRAVTAIEGEIPFSRELKKS-SDELGLTQETQSLSFH 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,334,648
Number of Sequences: 28952
Number of extensions: 323157
Number of successful extensions: 1065
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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