BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0528 (525 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_03_0517 - 21674155-21674334,21674420-21674674,21674829-216749... 28 4.0 >06_03_0517 - 21674155-21674334,21674420-21674674,21674829-21674969, 21675070-21675228,21676578-21676738,21680167-21680302 Length = 343 Score = 28.3 bits (60), Expect = 4.0 Identities = 8/23 (34%), Positives = 17/23 (73%) Frame = -2 Query: 146 FLPFINYLPNSYFTVVVTTDDYR 78 + P++++LPN F +V+T ++R Sbjct: 242 YFPYLSWLPNKSFDTIVSTTEFR 264 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,787,845 Number of Sequences: 37544 Number of extensions: 132165 Number of successful extensions: 206 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 204 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 206 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1154538620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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