Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0528
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0517 - 21674155-21674334,21674420-21674674,21674829-216749...    28   4.0  

>06_03_0517 -
           21674155-21674334,21674420-21674674,21674829-21674969,
           21675070-21675228,21676578-21676738,21680167-21680302
          Length = 343

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 146 FLPFINYLPNSYFTVVVTTDDYR 78
           + P++++LPN  F  +V+T ++R
Sbjct: 242 YFPYLSWLPNKSFDTIVSTTEFR 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,787,845
Number of Sequences: 37544
Number of extensions: 132165
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)