Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0527
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 77 3e-15
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 68 1e-12
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 62 1e-10
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 53 5e-08
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 51 2e-07
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 46 6e-06
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 42 7e-05
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 42 1e-04
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 41 2e-04
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 40 3e-04
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 35 0.014
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 31 0.18
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 28 1.2
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 27 2.9
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 77.0 bits (181), Expect = 3e-15
Identities = 41/96 (42%), Positives = 57/96 (59%)
Frame = +3
Query: 60 TVXDIAARLNIPXXEVNPREAKAAVVHGTELRELNSDQLDDILKFHTEIVFARTSPQQKL 239
T IA L + + + + G +L +L+S L D + +VFART+PQ K+
Sbjct: 552 TAISIARSLGMAIPSNDEEAIRNYALTGAQLDDLDSSSLRDAVS--RVVVFARTTPQHKM 609
Query: 240 IIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXMG 347
IVE Q LG +VA+TGDGV D+PALK AD+G+ MG
Sbjct: 610 KIVEALQSLGDVVAMTGDGVNDAPALKLADIGIAMG 645
Score = 29.9 bits (64), Expect = 0.40
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 355 GSDXSKHAXDMILLXDXFASIVTGV 429
G+D +K A DMIL D FA+I++ V
Sbjct: 648 GTDVAKEAADMILTDDSFATILSAV 672
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 68.1 bits (159), Expect = 1e-12
Identities = 35/71 (49%), Positives = 48/71 (67%)
Frame = +3
Query: 135 VHGTELRELNSDQLDDILKFHTEIVFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPA 314
+ G E R L+ ++ +IL V AR+SP K +++EG Q+LG +VAVTGDG D+PA
Sbjct: 831 MEGPEFRSLSDEKRLEILPKLD--VLARSSPLDKQLLIEGLQKLGNVVAVTGDGTNDAPA 888
Query: 315 LKKADVGVXMG 347
LKKA+VG MG
Sbjct: 889 LKKANVGFSMG 899
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 61.7 bits (143), Expect = 1e-10
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Frame = +3
Query: 57 ETVXDIAARLNIPXXEVNPREAKAA--VVHGTELRELNSDQLDDILKFHTEIVFARTSPQ 230
ET IA + I ++ R+ + V+ G++ L+ +++D + +V AR +PQ
Sbjct: 625 ETAKAIAREVGIIPPFISDRDPNMSWMVMTGSQFDALSDEEVDSLKALC--LVIARCAPQ 682
Query: 231 QKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXMG 347
K+ ++E R VA+TGDGV DSP+LK+A+VG+ MG
Sbjct: 683 TKVKMIEALHRRKAFVAMTGDGVNDSPSLKQANVGIAMG 721
Score = 29.1 bits (62), Expect = 0.71
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 355 GSDXSKHAXDMILLXDXFASIVTGV 429
GSD +K A D++L D F+SIV +
Sbjct: 724 GSDVAKDASDIVLTDDNFSSIVNAI 748
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 52.8 bits (121), Expect = 5e-08
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3
Query: 210 FARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGV 338
FA PQ K +V+ Q+ G +VA+TGDGV D+P+LKKAD G+
Sbjct: 693 FAEVFPQHKYAVVDILQQRGYLVAMTGDGVNDAPSLKKADAGI 735
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = +3
Query: 210 FARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGV 338
F PQ K +V+ Q+ G +VA+TGDGV D+P+LKKAD G+
Sbjct: 605 FGEVFPQHKYAVVDILQQRGYLVAMTGDGVNDAPSLKKADTGI 647
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 46.0 bits (104), Expect = 6e-06
Identities = 24/46 (52%), Positives = 27/46 (58%)
Frame = +3
Query: 207 VFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXM 344
V AR SP K VE CQ+ G V GDG D ALK+ADVGV +
Sbjct: 810 VLARMSPFDKATYVELCQKYGCKVGFCGDGANDCIALKQADVGVSL 855
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/46 (45%), Positives = 26/46 (56%)
Frame = +3
Query: 207 VFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXM 344
+FAR SP +K +V Q L V GDG D ALK ADVG+ +
Sbjct: 987 IFARMSPSEKNELVSCFQNLNYCVGFCGDGANDCGALKAADVGISL 1032
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 177 DDILKFHTEI-VFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXM 344
D I+ T V+AR SP QK ++ + G I + GDG D ALK+A VGV +
Sbjct: 785 DVIMSIFTHAWVYARVSPSQKEFMISTLKHNGYITLMCGDGTNDVGALKQAHVGVAL 841
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 207 VFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGV 338
V+A P QK I++ + VA+ GDG+ DSP+L ADVG+
Sbjct: 714 VYAEAVPSQKAEIIQKLKDQKHCVAMVGDGINDSPSLVLADVGI 757
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 40.3 bits (90), Expect = 3e-04
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Frame = +3
Query: 117 EAKAAVVHGTELRELNSDQLD----DILKFHTEIVFARTSPQQKLIIVEGCQR-LGXIVA 281
E+ A V+ G L L+ ++ ++ R SP QK +IV+ +R G ++
Sbjct: 846 ESMALVIDGVSLTYALDFSLERRFFELASLCRAVICCRVSPLQKALIVKMVKRNTGEVLL 905
Query: 282 VTGDGVXDSPALKKADVGVXMGIXRLRRFQACR*HD 389
GDG D P ++ A VGV GI + QA R D
Sbjct: 906 AIGDGANDVPMIQAAHVGV--GISGMEGLQAVRSSD 939
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 34.7 bits (76), Expect = 0.014
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +3
Query: 111 PREAKAAVVHGTELRELNSDQLDDIL----KFHTEIVFARTSPQQKLIIVEGCQR-LGXI 275
P A V+ G L + S+Q+ + K ++ R SP QK +V ++ L +
Sbjct: 970 PSPKHAIVIDGDALNFVLSEQVSFLFLMLCKQCKTVLCCRVSPSQKAAVVALVKKSLNVV 1029
Query: 276 VAVTGDGVXDSPALKKADVGV 338
GDG D +++ADVGV
Sbjct: 1030 TLAIGDGANDVSMIQEADVGV 1050
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 204 IVFARTSPQQKLIIVEGCQR-LGXIVAVTGDGVXDSPALKKADVGV 338
++ R SP QK +V+ + L + GDG D ++KAD+GV
Sbjct: 982 VLCCRVSPAQKADVVQLVRESLEVMTLAIGDGANDVAMIQKADIGV 1027
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 28.3 bits (60), Expect = 1.2
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = -2
Query: 263 TLATLNDDQLLLRGGAGEHDFGVELEDIIELVGVQFXELGSVXDSGFGFAGIHLXXGDIQ 84
T+A + + L G G+ LED LVGV F +LGS S + L GD+
Sbjct: 1170 TVAVVCEVDGYLLSGQGQKVIVRALEDEDHLVGVSFIDLGSYTLSAKCLRNL-LLFGDV- 1227
Query: 83 TRSNVLYGLVTFRNYTYR 30
R NV + V F YR
Sbjct: 1228 -RQNVTF--VGFAEEPYR 1242
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 327 DVGVXMGIXRLRRFQACR*HDSTXRXLRVH 416
DV + +G+ LRR+QAC D LR+H
Sbjct: 192 DVDMLLGLDMLRRYQAC--IDLENNVLRIH 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,718
Number of Sequences: 5004
Number of extensions: 30827
Number of successful extensions: 75
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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