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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0527
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                 177   1e-44
SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   9e-24
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               56   3e-08
SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_43063| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_33263| Best HMM Match : Hydrolase (HMM E-Value=0.052)               43   3e-04
SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                34   0.11 
SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)       33   0.25 
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                30   2.3  
SB_43727| Best HMM Match : TolA (HMM E-Value=0.21)                     29   4.0  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   5.3  
SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_19943| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   7.0  

>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1003

 Score =  177 bits (430), Expect = 1e-44
 Identities = 87/116 (75%), Positives = 99/116 (85%)
 Frame = +3

Query: 3   PITAKAIAKSVGIISEGNETVXDIAARLNIPXXEVNPREAKAAVVHGTELRELNSDQLDD 182
           PITAKAIAK VGIISEG ETV DIA RLNIP  EV+  +AKA VVHG++L++ + +++D 
Sbjct: 636 PITAKAIAKGVGIISEGTETVEDIAERLNIPVEEVDETKAKAIVVHGSQLKDYDQEKIDG 695

Query: 183 ILKFHTEIVFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXMGI 350
           IL  HTEIVFARTSPQQKLIIVEGCQR+G IVAVTGDGV DSPALKKAD+GV MGI
Sbjct: 696 ILCNHTEIVFARTSPQQKLIIVEGCQRMGAIVAVTGDGVNDSPALKKADIGVAMGI 751


>SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score =  107 bits (257), Expect = 9e-24
 Identities = 58/117 (49%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
 Frame = +3

Query: 3   PITAKAIAKSVGIISEGNETVXDIAARLNIPXXEVNPR-EAKAAVVHGTELRELNSDQLD 179
           P+     +++  I+  G E       R  I    +  R +A   +     ++++    +D
Sbjct: 76  PVEEVDKSQADAIVVHGGELKKLCGDRPQIKQGLIGTRIDANRIMPSSNFVQDMTDKDID 135

Query: 180 DILKFHTEIVFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXMGI 350
           DILK H EIVFARTSPQQKLIIVEGCQR G IVAVTGDGV DSPALKKAD+G+ MGI
Sbjct: 136 DILKNHKEIVFARTSPQQKLIIVEGCQRNGAIVAVTGDGVNDSPALKKADIGIAMGI 192



 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 38/52 (73%), Positives = 41/52 (78%)
 Frame = +2

Query: 440 RLTFXNLKKSFAXTLTXNIPEISPFLAFILCDIALPLGTVTILCIDLGTXMV 595
           RL F NLKKS A TLT NIPEI+PFL FI+  I  PLGT+TILCIDLGT MV
Sbjct: 222 RLIFDNLKKSIAYTLTSNIPEITPFLMFIVAGIPQPLGTITILCIDLGTDMV 273



 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 36/57 (63%), Positives = 43/57 (75%)
 Frame = +3

Query: 3   PITAKAIAKSVGIISEGNETVXDIAARLNIPXXEVNPREAKAAVVHGTELRELNSDQ 173
           PITAKAIA+ VGIISEG ETV DI+ RL IP  EV+  +A A VVHG EL++L  D+
Sbjct: 46  PITAKAIAQGVGIISEGTETVEDISLRLEIPVEEVDKSQADAIVVHGGELKKLCGDR 102



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/25 (80%), Positives = 20/25 (80%)
 Frame = +1

Query: 355 GSDXSKHAXDMILLXDXFASIVTGV 429
           GSD SK A DMILL D FASIVTGV
Sbjct: 194 GSDVSKQAADMILLDDNFASIVTGV 218


>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1154

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 33/69 (47%), Positives = 46/69 (66%)
 Frame = +3

Query: 141 GTELRELNSDQLDDILKFHTEIVFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALK 320
           G EL  L+  QL  I+   +  VF R SP+ K+ IV+  Q+ G +VA+TGDGV D+ ALK
Sbjct: 640 GEELEALDGLQLSTIIDQVS--VFYRVSPRHKVAIVKALQQHGHVVAMTGDGVNDAVALK 697

Query: 321 KADVGVXMG 347
           +AD+G+ MG
Sbjct: 698 RADIGIAMG 706


>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
 Frame = +3

Query: 6   ITAKAIAKSVGIISEGNETVXDIAARLNIPXXEVNPREAKAAVVHGTELRELN-SDQLDD 182
           + AKA  + + I  +   T   I  R+ +   +    +       G E  +L  S+Q + 
Sbjct: 631 LCAKAGIRVIVITGDNKATAEAICRRIEVFGQD---EDTTGLSYSGREFDDLTPSEQREA 687

Query: 183 ILKFHTEIVFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXMG 347
            L+     +F+R  P  K  IV   Q  G I A+TGDGV D+PALKKA++GV MG
Sbjct: 688 CLRAR---LFSRVEPSHKSKIVTYLQEEGEISAMTGDGVNDAPALKKAEIGVAMG 739


>SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 811

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 30/53 (56%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
 Frame = +3

Query: 207 VFARTSPQQKLIIVEGC--QRLGX---IVAVTGDGVXDSPALKKADVGVXMGI 350
           V AR+SP+ K  +V+G    +L     IVAVTGDG  D PALKKADVG  MGI
Sbjct: 737 VLARSSPEDKYTLVKGIIDSKLNPAREIVAVTGDGTNDGPALKKADVGFAMGI 789


>SB_43063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +3

Query: 207 VFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXMG 347
           VFA   P  K+  +   Q  G + A+ GDG+ DSPAL +A VG+ +G
Sbjct: 6   VFAEVLPSHKVEKIRALQAKGFVTAMVGDGINDSPALAQAHVGIAIG 52


>SB_33263| Best HMM Match : Hydrolase (HMM E-Value=0.052)
          Length = 335

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
 Frame = +3

Query: 207 VFARTSPQQKLIIVE-----GCQRLGXIVAVTGDGVXDSPALKKADVGVXM 344
           V AR + + K  +V+     G  R G +VAVTG GV D P L+KADVG  M
Sbjct: 285 VLARATARDKYTLVKHVMGSGVNRQGEMVAVTGAGVHDGPVLRKADVGFTM 335


>SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/60 (38%), Positives = 32/60 (53%)
 Frame = +3

Query: 165 SDQLDDILKFHTEIVFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXM 344
           S   D IL F    VFAR +P+QK +++   +  G +  + GDG  D  ALK A  GV +
Sbjct: 432 SKLFDAILPFVR--VFARVAPKQKELVITRLKSRGYVTLMCGDGTNDVGALKHAHCGVAL 489


>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +3

Query: 276  VAVTGDGVXDSPALKKADVGVXMG 347
            V + GDGV D PAL  AD+G+ MG
Sbjct: 1006 VGMVGDGVNDGPALAAADLGIAMG 1029


>SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)
          Length = 573

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +3

Query: 207 VFARTSPQQKLIIVEGCQRL-----GXIVAVTGDGVXDSPALKKADVGVXMG 347
           V +R +P+ K   ++  +R      G +VAV   GV D+  L+ ADVG+ MG
Sbjct: 116 VVSRCTPEGKRSFMQAIRRSRVRREGEVVAVVASGVHDANFLRDADVGLSMG 167


>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = +3

Query: 24  AKSVGIISEGN-ETVXDIAARLNIPXXEVNP---REAKAAVVHGTELRELNSDQLDDILK 191
           +K V  +S+ + E   D+A ++N    E+     REA     H TEL EL +    ++++
Sbjct: 4   SKEVETLSKSHDEKTKDLANQINDLKTEIQASEKREADLVTAHKTELEELQTSNESELMR 63

Query: 192 FHTEIVFARTSPQQKLIIVE 251
             +++    +  Q K + +E
Sbjct: 64  VRSDLEEMTSLLQSKKVDLE 83


>SB_43727| Best HMM Match : TolA (HMM E-Value=0.21)
          Length = 340

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 331 TSAFXRAGESXTPSPVTATMXPRRWQPSTMISFCC 227
           +SA  R+G S T SPVT  + PR ++     +  C
Sbjct: 227 SSATERSGTSGTGSPVTRKLQPREYESDGAFAVVC 261


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 50   R*RDRXGHCCAFEYPRXRGESPRSQSRCRXRNRAPXIELRP 172
            R +   GHCC+F +   RG    S ++   R+R P   L P
Sbjct: 2503 RQKSNDGHCCSFPF-IYRGRRYNSCTKAGRRDRRPWCSLTP 2542


>SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1138

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 204  IVFARTSPQQKLIIVEGCQR-LGXIVAVTGDGVXDSPALKKADVGV 338
            ++  R +P QK  +VE  +  L  +    GDG  D   ++ ADVG+
Sbjct: 897  VLCCRATPMQKASVVELVRDGLKVMTLAIGDGANDVSMIQMADVGI 942


>SB_19943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 355 GSDXSKHAXDMILLXDXFASIVTGV 429
           GSD +K + D++LL D F SIV  +
Sbjct: 4   GSDVAKDSADVVLLDDNFGSIVWAI 28


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 50  R*RDRXGHCCAFEYPRXRGESPRSQSRCRXRNRAPXIELRP 172
           R +   GHCC+F +   RG    S ++   R+R P   L P
Sbjct: 600 RQKTNDGHCCSFPF-IYRGRRYNSCTKAGRRDRRPWCSLTP 639



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 50   R*RDRXGHCCAFEYPRXRGESPRSQSRCRXRNRAPXIELRP 172
            R +   GHCC+F +   RG    S ++   R+R P   L P
Sbjct: 2763 RQKTNDGHCCSFPF-IYRGRRYNSCTKAGRRDRRPWCSLTP 2802


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,121,140
Number of Sequences: 59808
Number of extensions: 255951
Number of successful extensions: 1390
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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