BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0527 (750 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 177 1e-44 SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 9e-24 SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10 SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08 SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07 SB_43063| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05 SB_33263| Best HMM Match : Hydrolase (HMM E-Value=0.052) 43 3e-04 SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002 SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 34 0.11 SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12) 33 0.25 SB_20508| Best HMM Match : Filament (HMM E-Value=0.037) 30 2.3 SB_43727| Best HMM Match : TolA (HMM E-Value=0.21) 29 4.0 SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 5.3 SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3 SB_19943| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3 SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 7.0 >SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) Length = 1003 Score = 177 bits (430), Expect = 1e-44 Identities = 87/116 (75%), Positives = 99/116 (85%) Frame = +3 Query: 3 PITAKAIAKSVGIISEGNETVXDIAARLNIPXXEVNPREAKAAVVHGTELRELNSDQLDD 182 PITAKAIAK VGIISEG ETV DIA RLNIP EV+ +AKA VVHG++L++ + +++D Sbjct: 636 PITAKAIAKGVGIISEGTETVEDIAERLNIPVEEVDETKAKAIVVHGSQLKDYDQEKIDG 695 Query: 183 ILKFHTEIVFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXMGI 350 IL HTEIVFARTSPQQKLIIVEGCQR+G IVAVTGDGV DSPALKKAD+GV MGI Sbjct: 696 ILCNHTEIVFARTSPQQKLIIVEGCQRMGAIVAVTGDGVNDSPALKKADIGVAMGI 751 >SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 523 Score = 107 bits (257), Expect = 9e-24 Identities = 58/117 (49%), Positives = 73/117 (62%), Gaps = 1/117 (0%) Frame = +3 Query: 3 PITAKAIAKSVGIISEGNETVXDIAARLNIPXXEVNPR-EAKAAVVHGTELRELNSDQLD 179 P+ +++ I+ G E R I + R +A + ++++ +D Sbjct: 76 PVEEVDKSQADAIVVHGGELKKLCGDRPQIKQGLIGTRIDANRIMPSSNFVQDMTDKDID 135 Query: 180 DILKFHTEIVFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXMGI 350 DILK H EIVFARTSPQQKLIIVEGCQR G IVAVTGDGV DSPALKKAD+G+ MGI Sbjct: 136 DILKNHKEIVFARTSPQQKLIIVEGCQRNGAIVAVTGDGVNDSPALKKADIGIAMGI 192 Score = 79.4 bits (187), Expect = 3e-15 Identities = 38/52 (73%), Positives = 41/52 (78%) Frame = +2 Query: 440 RLTFXNLKKSFAXTLTXNIPEISPFLAFILCDIALPLGTVTILCIDLGTXMV 595 RL F NLKKS A TLT NIPEI+PFL FI+ I PLGT+TILCIDLGT MV Sbjct: 222 RLIFDNLKKSIAYTLTSNIPEITPFLMFIVAGIPQPLGTITILCIDLGTDMV 273 Score = 71.7 bits (168), Expect = 6e-13 Identities = 36/57 (63%), Positives = 43/57 (75%) Frame = +3 Query: 3 PITAKAIAKSVGIISEGNETVXDIAARLNIPXXEVNPREAKAAVVHGTELRELNSDQ 173 PITAKAIA+ VGIISEG ETV DI+ RL IP EV+ +A A VVHG EL++L D+ Sbjct: 46 PITAKAIAQGVGIISEGTETVEDISLRLEIPVEEVDKSQADAIVVHGGELKKLCGDR 102 Score = 40.7 bits (91), Expect = 0.001 Identities = 20/25 (80%), Positives = 20/25 (80%) Frame = +1 Query: 355 GSDXSKHAXDMILLXDXFASIVTGV 429 GSD SK A DMILL D FASIVTGV Sbjct: 194 GSDVSKQAADMILLDDNFASIVTGV 218 >SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1154 Score = 62.5 bits (145), Expect = 4e-10 Identities = 33/69 (47%), Positives = 46/69 (66%) Frame = +3 Query: 141 GTELRELNSDQLDDILKFHTEIVFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALK 320 G EL L+ QL I+ + VF R SP+ K+ IV+ Q+ G +VA+TGDGV D+ ALK Sbjct: 640 GEELEALDGLQLSTIIDQVS--VFYRVSPRHKVAIVKALQQHGHVVAMTGDGVNDAVALK 697 Query: 321 KADVGVXMG 347 +AD+G+ MG Sbjct: 698 RADIGIAMG 706 >SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1311 Score = 56.0 bits (129), Expect = 3e-08 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Frame = +3 Query: 6 ITAKAIAKSVGIISEGNETVXDIAARLNIPXXEVNPREAKAAVVHGTELRELN-SDQLDD 182 + AKA + + I + T I R+ + + + G E +L S+Q + Sbjct: 631 LCAKAGIRVIVITGDNKATAEAICRRIEVFGQD---EDTTGLSYSGREFDDLTPSEQREA 687 Query: 183 ILKFHTEIVFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXMG 347 L+ +F+R P K IV Q G I A+TGDGV D+PALKKA++GV MG Sbjct: 688 CLRAR---LFSRVEPSHKSKIVTYLQEEGEISAMTGDGVNDAPALKKAEIGVAMG 739 >SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 811 Score = 52.8 bits (121), Expect = 3e-07 Identities = 30/53 (56%), Positives = 35/53 (66%), Gaps = 5/53 (9%) Frame = +3 Query: 207 VFARTSPQQKLIIVEGC--QRLGX---IVAVTGDGVXDSPALKKADVGVXMGI 350 V AR+SP+ K +V+G +L IVAVTGDG D PALKKADVG MGI Sbjct: 737 VLARSSPEDKYTLVKGIIDSKLNPAREIVAVTGDGTNDGPALKKADVGFAMGI 789 >SB_43063| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 201 Score = 45.6 bits (103), Expect = 4e-05 Identities = 20/47 (42%), Positives = 28/47 (59%) Frame = +3 Query: 207 VFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXMG 347 VFA P K+ + Q G + A+ GDG+ DSPAL +A VG+ +G Sbjct: 6 VFAEVLPSHKVEKIRALQAKGFVTAMVGDGINDSPALAQAHVGIAIG 52 >SB_33263| Best HMM Match : Hydrolase (HMM E-Value=0.052) Length = 335 Score = 42.7 bits (96), Expect = 3e-04 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Frame = +3 Query: 207 VFARTSPQQKLIIVE-----GCQRLGXIVAVTGDGVXDSPALKKADVGVXM 344 V AR + + K +V+ G R G +VAVTG GV D P L+KADVG M Sbjct: 285 VLARATARDKYTLVKHVMGSGVNRQGEMVAVTGAGVHDGPVLRKADVGFTM 335 >SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 778 Score = 39.9 bits (89), Expect = 0.002 Identities = 23/60 (38%), Positives = 32/60 (53%) Frame = +3 Query: 165 SDQLDDILKFHTEIVFARTSPQQKLIIVEGCQRLGXIVAVTGDGVXDSPALKKADVGVXM 344 S D IL F VFAR +P+QK +++ + G + + GDG D ALK A GV + Sbjct: 432 SKLFDAILPFVR--VFARVAPKQKELVITRLKSRGYVTLMCGDGTNDVGALKHAHCGVAL 489 >SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) Length = 1145 Score = 34.3 bits (75), Expect = 0.11 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +3 Query: 276 VAVTGDGVXDSPALKKADVGVXMG 347 V + GDGV D PAL AD+G+ MG Sbjct: 1006 VGMVGDGVNDGPALAAADLGIAMG 1029 >SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12) Length = 573 Score = 33.1 bits (72), Expect = 0.25 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Frame = +3 Query: 207 VFARTSPQQKLIIVEGCQRL-----GXIVAVTGDGVXDSPALKKADVGVXMG 347 V +R +P+ K ++ +R G +VAV GV D+ L+ ADVG+ MG Sbjct: 116 VVSRCTPEGKRSFMQAIRRSRVRREGEVVAVVASGVHDANFLRDADVGLSMG 167 >SB_20508| Best HMM Match : Filament (HMM E-Value=0.037) Length = 722 Score = 29.9 bits (64), Expect = 2.3 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Frame = +3 Query: 24 AKSVGIISEGN-ETVXDIAARLNIPXXEVNP---REAKAAVVHGTELRELNSDQLDDILK 191 +K V +S+ + E D+A ++N E+ REA H TEL EL + ++++ Sbjct: 4 SKEVETLSKSHDEKTKDLANQINDLKTEIQASEKREADLVTAHKTELEELQTSNESELMR 63 Query: 192 FHTEIVFARTSPQQKLIIVE 251 +++ + Q K + +E Sbjct: 64 VRSDLEEMTSLLQSKKVDLE 83 >SB_43727| Best HMM Match : TolA (HMM E-Value=0.21) Length = 340 Score = 29.1 bits (62), Expect = 4.0 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 331 TSAFXRAGESXTPSPVTATMXPRRWQPSTMISFCC 227 +SA R+G S T SPVT + PR ++ + C Sbjct: 227 SSATERSGTSGTGSPVTRKLQPREYESDGAFAVVC 261 >SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) Length = 3804 Score = 28.7 bits (61), Expect = 5.3 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +2 Query: 50 R*RDRXGHCCAFEYPRXRGESPRSQSRCRXRNRAPXIELRP 172 R + GHCC+F + RG S ++ R+R P L P Sbjct: 2503 RQKSNDGHCCSFPF-IYRGRRYNSCTKAGRRDRRPWCSLTP 2542 >SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1138 Score = 28.7 bits (61), Expect = 5.3 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +3 Query: 204 IVFARTSPQQKLIIVEGCQR-LGXIVAVTGDGVXDSPALKKADVGV 338 ++ R +P QK +VE + L + GDG D ++ ADVG+ Sbjct: 897 VLCCRATPMQKASVVELVRDGLKVMTLAIGDGANDVSMIQMADVGI 942 >SB_19943| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 188 Score = 28.7 bits (61), Expect = 5.3 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 355 GSDXSKHAXDMILLXDXFASIVTGV 429 GSD +K + D++LL D F SIV + Sbjct: 4 GSDVAKDSADVVLLDDNFGSIVWAI 28 >SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) Length = 4002 Score = 28.3 bits (60), Expect = 7.0 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +2 Query: 50 R*RDRXGHCCAFEYPRXRGESPRSQSRCRXRNRAPXIELRP 172 R + GHCC+F + RG S ++ R+R P L P Sbjct: 600 RQKTNDGHCCSFPF-IYRGRRYNSCTKAGRRDRRPWCSLTP 639 Score = 28.3 bits (60), Expect = 7.0 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +2 Query: 50 R*RDRXGHCCAFEYPRXRGESPRSQSRCRXRNRAPXIELRP 172 R + GHCC+F + RG S ++ R+R P L P Sbjct: 2763 RQKTNDGHCCSFPF-IYRGRRYNSCTKAGRRDRRPWCSLTP 2802 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,121,140 Number of Sequences: 59808 Number of extensions: 255951 Number of successful extensions: 1390 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1303 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1390 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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