Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0525
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 28 1.6
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 27 2.2
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 2.2
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 27 2.2
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 26 5.0
SPBC17A3.02 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.0
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 26 5.0
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 26 6.6
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 25 8.7
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 8.7
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 253 SFIESVESSNMNFLTCISVTKSQIYRVLKRLD 348
SF E+ N+ FLT I KS++ + +LD
Sbjct: 1013 SFSENANLQNLLFLTAIKADKSRVMEYIDKLD 1044
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 686 TKDIKLVVVDLALMNPCCS-VAKICLKCQDKTGYNTISKTL 567
TKD K+++ ++ + NP S +AK D TG T S L
Sbjct: 55 TKDGKVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCL 95
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 538 RPISILTVFAKVFEMVLYPVLSWHFRQIFATEQHGFIKARSTTTNLMS 681
RP++I + K+ + +L VL + +F T HGF RS + L S
Sbjct: 308 RPLTIGSPRDKLVQEILRIVLEAIYEPLFNTASHGFRPGRSCHSALRS 355
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 94 PKLIWSFVKHKRSGKITLPGEMSLDDTTATNGSSICNLFAAHFSSVYNTTSIHSF 258
PK++W KR I +P E + D + + LF A + TS+H F
Sbjct: 479 PKIVWFKPSDKRVPLIAIPTEQAPTDFLGNDQAYAQRLFLASIKR-WPVTSLHPF 532
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 466 PLAWKQSLILPLFKSGDTGMVKNYRPISILTVFAKV 573
PL++ L + ++K TG+ N+ IS L V +V
Sbjct: 285 PLSYSLPLFIQMYKQNTTGLPSNFSGISQLYVTYRV 320
>SPBC17A3.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 119
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 151 GEMSLDDTTATNGSSICNLFAAHFSSVYNTTSIHSF 258
G +++ TNGS IC ++ + + T SI SF
Sbjct: 58 GGLAIASGDLTNGSGICTAWSIAYLMINATKSIKSF 93
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 73 ESSLASNPKLIWSFVKHKRSGKITLPGEM----SLDDTTATNGSSICNLFAAHFSSVYNT 240
+SS +S+ + S RSG + G S + T+GSS A S+ Y++
Sbjct: 532 KSSSSSSSRSGSSSSSSSRSGSTSSSGSSHTITSTSQSVHTSGSSTSTSSVAVTSTAYSS 591
Query: 241 TSIHSFIESVESS 279
+S S S+ESS
Sbjct: 592 SSSSSSSSSIESS 604
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 6.6
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Frame = +1
Query: 220 FSSVYNTTSIHSFIESVES-SNMNFLTCISVTKSQIYRVLKRLDVN-KGAGSDGLPSIFV 393
FS +S+ S + E S + FL CI+V + +Y + R+DV + + G+ F
Sbjct: 225 FSFKNKFSSLRSILFRSEGLSFVQFLVCIAVFATFMYTLNIRIDVPIRSSRVRGVRQNFP 284
Query: 394 SRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILPLFKSGDTGMVKNYRPI 546
+ Y +S + +I+ S+ S + A+ + P S T ++ Y PI
Sbjct: 285 LKLLY--TSVIPLIYFYSILSHLLVFAYALYSLCP--NSLITRLLVQYSPI 331
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 13 SGKRCSKLLHLNYTRYLENLESSLASNPKLIWSFVKHKRSGKITLPGEMSLDDTT 177
S + +L H+ +TR LE+ S LA K I F + KR +P ++S++ T
Sbjct: 443 SNTQVDQLFHVRHTRSLEHSVSLLAEMTKQINLFYE-KRKTLAVIP-DLSIEAKT 495
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 163 LDDTTATNGSSICNLFAAHFSSVYNTTS 246
L D+T T+GS + N A + V +TTS
Sbjct: 140 LPDSTTTSGSQVSNAVEASSTFVADTTS 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,235
Number of Sequences: 5004
Number of extensions: 68401
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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