Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0525
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 55 7e-08
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 39 0.005
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 38 0.006
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 32 0.56
04_04_1660 - 35140641-35141894 30 1.7
01_06_1562 - 38268514-38268902,38269310-38269451,38269517-382698... 29 5.2
09_04_0455 + 17728007-17728542,17728697-17728783,17729052-177292... 28 6.9
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 28 9.1
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 9.1
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 54.8 bits (126), Expect = 7e-08
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 1/151 (0%)
Frame = +1
Query: 235 NTTSIHSFIESVESSNMNFLTCISVTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYAL 414
N S+ + + MN C + +I + + ++ K G DG P+ F R L
Sbjct: 867 NPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQRNWGTL 926
Query: 415 SSPLSIIFNKSLSSGVFPLAWKQSLILPLFKSGDTGMVKNYRPISILTVFAKVFEMVLYP 594
S + + SG+ P + I+ + K +K+YRPIS+ V KV L
Sbjct: 927 KSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVN 986
Query: 595 VLSWHFRQIFATEQHGFIKARSTTTN-LMSF 684
L + + EQ FI+ R T N L++F
Sbjct: 987 RLRPILDDLVSKEQSAFIQGRMITDNALLAF 1017
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 38.7 bits (86), Expect = 0.005
Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Frame = +1
Query: 235 NTTSIHSFIESVESSNMNFLT--CISVTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAY 408
N + F++ VE + M + T +I ++ + +K G DG F+ +C +
Sbjct: 286 NCNKVVDFLDLVEENRMLSIYEWNFRETVKEIDSLMSIIPADKAPGPDGFNGFFMKKCWH 345
Query: 409 ALSSPLSIIFNKSLSSGVFPLAWKQSLILPLFKSGDTGMVKNYRPISILTVFAKVFEMVL 588
++ + + V S I + K V ++RPIS++ + K+ +L
Sbjct: 346 IIAQDYYRLVAHFHAGNVDLEILNSSFITLVPKKTSLETVNDFRPISLMGISLKIVTKLL 405
Query: 589 YPVLSWHFRQIFATEQHGFIKARS 660
L ++ + +GFIK ++
Sbjct: 406 AGRLQGVILKLVSDNHYGFIKGKT 429
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +1
Query: 481 QSLILPLFKSGDTGMVKNYRPISILTVFAKVFEMVLYPVLSWHFRQIFATEQHGFIKARS 660
++ I+ + K G V YRPIS+ K+ VL L F ++ +Q GF+K R
Sbjct: 970 RAYIVLIQKPGKENTVDGYRPISLQNCSVKILSKVLATRLQRVFLRMIHLDQTGFLKGRC 1029
Query: 661 TTTNLMSFVE 690
+ NL+ E
Sbjct: 1030 ISENLIYATE 1039
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 31.9 bits (69), Expect = 0.56
Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Frame = +1
Query: 142 TLPGEMSLDDTTATNGSSICNLFAAHFSSVYNTTSIHSFIESVESSNMNFLTCISVTKSQ 321
+L GE+ L++ +++ I ++ H S S H+ I ++ N++ S
Sbjct: 1218 SLSGELPLEELVSSSSIVILDVSFNHLSGALKELSAHTTIRPLQVLNISSNLFAGQFPST 1277
Query: 322 IYRVLKRLDVNKGAGSDGLPSIFVSRCAYALS-SPLSIIFNKSLSSGVFPLAWKQSLILP 498
++V+ L + + + I S C A S + L + FN+ G PL L
Sbjct: 1278 TWKVMNNLVALNASNNSFVGQILSSLCINAPSFAVLDLSFNQ--FGGSIPLDISNCSTLR 1335
Query: 499 LFKSG 513
+ K G
Sbjct: 1336 VLKGG 1340
>04_04_1660 - 35140641-35141894
Length = 417
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +1
Query: 37 LHLNYTRYLENLE-SSLASNPKLIWSFVKHKRSGKITLPGEMSLDDTTAT----NGSSIC 201
L L ++ +L N S +AS+P L++ +++ +LP S T +T ++C
Sbjct: 97 LRLPFSAFLPNQSFSPVASSPSLLYLWLESPSPSPPSLPSSSSSSSTASTAHPPKSLAVC 156
Query: 202 NLFAAHFS 225
N FA +S
Sbjct: 157 NPFAGTYS 164
>01_06_1562 -
38268514-38268902,38269310-38269451,38269517-38269865,
38270848-38271107
Length = 379
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 352 NKGAGSDGLPSIFVSRCAYALSSP 423
N GAG+DGL S+ +S+C AL+ P
Sbjct: 304 NAGAGADGLASLNISQCT-ALTPP 326
>09_04_0455 +
17728007-17728542,17728697-17728783,17729052-17729290,
17729368-17729486,17729594-17729680,17729758-17729805
Length = 371
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/75 (22%), Positives = 39/75 (52%)
Frame = +1
Query: 241 TSIHSFIESVESSNMNFLTCISVTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSS 420
+S ++ I++V+ N++FL +++ + + VL + + G+G + C Y +
Sbjct: 257 SSSNAVIDAVD--NISFLLAVTILLNGVQPVLSGVAI--GSGWQAAVAYVNIGCYYFIGV 312
Query: 421 PLSIIFNKSLSSGVF 465
P+ ++ S + GVF
Sbjct: 313 PIGVLLGWSFNLGVF 327
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Frame = +1
Query: 268 VESSNMNFLTCISVTK---SQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSP---LS 429
+ + +N L C ++ ++ ++K + +K DG+ F+ +C +S L+
Sbjct: 206 ISAKKLNELCCWTLDSFYTQEVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLA 265
Query: 430 IIFNKSLSSGVFPLAWKQSLILPLFKSGDTGMVKNYRPISILTVFAKV 573
F+ + + P+ ++P S +T V +YRPIS++ + K+
Sbjct: 266 AHFHACYTD-LQPINKSFITLVPKKSSPET--VNDYRPISLMGISLKL 310
>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 686 TKDIKLVVVDLALMNPCCSVAKICLKCQDKTGYNTISKTLAKTVRMEIGL 537
T+ ++ + + +A +P ICLK DK + + LA+ V+ +GL
Sbjct: 1251 TEKLESLRIAVAKDSPMWETLDICLKVVDKESLDLLVPRLAQMVKSAVGL 1300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,733,346
Number of Sequences: 37544
Number of extensions: 404790
Number of successful extensions: 891
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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