Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0525
(750 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 74 2e-13
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 70 4e-12
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 70 4e-12
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 66 6e-11
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 64 1e-10
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 64 2e-10
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 60 3e-09
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 60 3e-09
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 59 6e-09
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 59 6e-09
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 59 6e-09
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 59 6e-09
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 59 6e-09
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 58 2e-08
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 58 2e-08
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 58 2e-08
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 58 2e-08
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 58 2e-08
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 57 3e-08
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 57 3e-08
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 57 3e-08
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 56 4e-08
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 51 2e-06
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 47 3e-05
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 45 1e-04
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 74.1 bits (174), Expect = 2e-13
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Frame = +1
Query: 307 VTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQ- 483
+T ++ KR+ NK G DG+P + V A A F + L GVFP WK+
Sbjct: 402 ITSCEVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGVFPKRWKKM 461
Query: 484 SLILPLFKSGDTGMVKNYRPISILTVFAKVFEMVLYP--VLSWHFRQIFATEQHGFIKAR 657
L+L L G + ++YRP+ +L + K+FE +LY L +Q+GF K +
Sbjct: 462 KLVLLLKGKGPANVPRSYRPLCLLDIVGKLFERILYARIELITESPTGLQGQQYGFRKGK 521
Query: 658 STTTNLMSFVEDLTQGVD 711
ST L S + + +D
Sbjct: 522 STLDALKSVTDAARKALD 539
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 69.7 bits (163), Expect = 4e-12
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 16/218 (7%)
Frame = +1
Query: 97 KLIWSFVKHKRSGKITLPGEMSLDDTTATNGSSICNLFAAHFSSVYNTTSIHS------- 255
K W+ K + K +P D+ A+ G N+ A F +N T +S
Sbjct: 382 KPFWNITKAIKKRKQIVPCLSKADEIYAS-GKEKANILADVFQLKHNLTHSYSNQNTIDQ 440
Query: 256 ---FIESVESSNMNFLTCISVTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPL 426
++S+ + N VT +++ ++K L K G DG+P+I + + + +
Sbjct: 441 VKISLQSIAETPNNIAEICRVTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSAINHI 500
Query: 427 SIIFNKSLSSGVFPLAWKQSLILPLFKSG-DTGMVKNYRPISILTVFAKVFEMV--LYPV 597
I N L +G FP WK + I+P+ K G ++YRPIS+L+ +K+ E + L V
Sbjct: 501 VNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKLRLV 560
Query: 598 LSWHFRQIFATEQHGFIKARST---TTNLMSFVEDLTQ 702
T Q+GF +T T L +++++ Q
Sbjct: 561 KFLDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQ 598
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 69.7 bits (163), Expect = 4e-12
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 16/218 (7%)
Frame = +1
Query: 97 KLIWSFVKHKRSGKITLPGEMSLDDTTATNGSSICNLFAAHFSSVYNTTSIHS------- 255
K W+ K + K +P D+ A+ G N+ A F +N T +S
Sbjct: 330 KPFWNITKAIKKRKQIVPCLSKADEIYAS-GKEKANILADVFQLKHNLTHSYSNQNTIDQ 388
Query: 256 ---FIESVESSNMNFLTCISVTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPL 426
++S+ + N VT +++ ++K L K G DG+P+I + + + +
Sbjct: 389 VKISLQSIAETPNNIAEICRVTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSAINHI 448
Query: 427 SIIFNKSLSSGVFPLAWKQSLILPLFKSG-DTGMVKNYRPISILTVFAKVFEMV--LYPV 597
I N L +G FP WK + I+P+ K G ++YRPIS+L+ +K+ E + L V
Sbjct: 449 VNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKLRLV 508
Query: 598 LSWHFRQIFATEQHGFIKARST---TTNLMSFVEDLTQ 702
T Q+GF +T T L +++++ Q
Sbjct: 509 KFLDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQ 546
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 65.7 bits (153), Expect = 6e-11
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 6/235 (2%)
Frame = +1
Query: 58 YLENLESSLASNPKLIWSFVKHKRSGKITLPGEMSLDDTTATNGSSICNLFAAHFSSVYN 237
Y+E L + P +W ++ ++ + S T + + FA H +V+
Sbjct: 348 YIEQLSPTSTKYP--LWRAHRNLKTPIAPIMPLRSPSGTWFRSDEERASAFADHLQNVFR 405
Query: 238 TT-SIHSFI-ESVESSNMNFLTCISVTKSQIYRVLK-RLDVNKGAGSDGLPSIFVSRCAY 408
S ++FI + ++N++ ++ +V+K +L+ K G D + +
Sbjct: 406 PNPSTNTFILPPLIAANLDPQEPFEFRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPK 465
Query: 409 ALSSPLSIIFNKSLSSGVFPLAWKQSLILPLFKSG-DTGMVKNYRPISILTVFAKVFEMV 585
+ ++FN G FP WK+S I+ + K G D +YRPIS+LT +K+FE +
Sbjct: 466 CAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKM 525
Query: 586 LYPVLSWHFR--QIFATEQHGFIKARSTTTNLMSFVEDLTQGVDHGDSLDTIYTD 744
L +S H R T Q GF + T + ++ +H + I+ D
Sbjct: 526 LLLRISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLD 580
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 64.5 bits (150), Expect = 1e-10
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 6/185 (3%)
Frame = +1
Query: 208 FAAHFSSVYNTT-SIHSFI-ESVESSNMNFLTCISVTKSQIYRVLK-RLDVNKGAGSDGL 378
FA H +V+ S ++FI + ++N++ ++ +V+K +L+ K G D +
Sbjct: 396 FADHLQNVFRPNPSTNTFILPPLIAANLDPQEPFEFRPCELAKVIKEQLNPRKSPGYDLI 455
Query: 379 PSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILPLFKSG-DTGMVKNYRPISIL 555
+ + ++FN G FP WK+S I+ + K G D +YRPIS+L
Sbjct: 456 TPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLL 515
Query: 556 TVFAKVFEMVLYPVLSWHFR--QIFATEQHGFIKARSTTTNLMSFVEDLTQGVDHGDSLD 729
T +K+FE +L +S H R T Q GF + T + ++ +H +
Sbjct: 516 TCLSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCT 575
Query: 730 TIYTD 744
I+ D
Sbjct: 576 AIFLD 580
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 64.1 bits (149), Expect = 2e-10
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 6/238 (2%)
Frame = +1
Query: 55 RYLENLESSLASNPKLIWSFVKHKRSGKITLPGEMSLDDTTATNGSSICNLFAAHFSSVY 234
RY+E L + + K +W R T+ + A + N FAAH +V+
Sbjct: 348 RYIEQLTPT-GTKQKSLWRAHSTLRPPTETVLPIKNSSGGWARSDEDRANTFAAHLQNVF 406
Query: 235 NTTSIHSF--IESVESSNMNFLTCISVTKSQIYRVLK-RLDVNKGAGSDGLPSIFVSRCA 405
S + S + T I +I +++K L K G D + + +
Sbjct: 407 TPNQATSTFALPSYPVNRHQQHTPIVFRPKEITKIIKDNLSPKKSPGYDLITPEMIIQLP 466
Query: 406 YALSSPLSIIFNKSLSSGVFPLAWKQSLILPLFKSGDTGMV-KNYRPISILTVFAKVFEM 582
++ ++ +FN G FP WK I+ + K G V +YRPIS+L+ +K+FE
Sbjct: 467 HSAVRYITKLFNAITKLGYFPQRWKMMKIIMIPKPGKNHTVASSYRPISLLSCISKLFEK 526
Query: 583 VLYPVLSWH--FRQIFATEQHGFIKARSTTTNLMSFVEDLTQGVDHGDSLDTIYTDFS 750
L L+ H + I Q GF ++ T + ++ ++ + ++ D S
Sbjct: 527 CLLIRLNQHQTYHNIIPAHQFGFRESHGTIEQVNRITTEIRTAFEYREYCTAVFLDVS 584
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 60.1 bits (139), Expect = 3e-09
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Frame = +1
Query: 307 VTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQS 486
+T +++ +K L +K G D + + + + L +I+N L G +P AWK +
Sbjct: 493 ITLNELNEEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHA 552
Query: 487 LILPLFKSG-DTGMVKNYRPISILTVFAKVFEMVLYPVLSW--HFRQIFATEQHGFIKAR 657
+ + K G + K+YRPIS+L+ +K+FE +L L F++ Q GF K
Sbjct: 553 QVKMILKPGKSSNEPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEH 612
Query: 658 STTTNLMSFVEDLTQGVDHGDSLDTIYTDFS 750
T + + + + + + ++ D S
Sbjct: 613 GTEQQIARVTQFILEAFERKEYCSAVFLDIS 643
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 60.1 bits (139), Expect = 3e-09
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 9/198 (4%)
Frame = +1
Query: 178 ATNGSSICNLFAAHFSSVYN------TTSIHSFIESVESSNMNFLTCISVTKSQIYRVLK 339
A N N FA H + + T ++S+E+ L + +I +K
Sbjct: 388 AKNEEEQANCFANHLETRFTHFQFATTEQYQETLDSLETPLQMSLPIKPIRVEEIVEAIK 447
Query: 340 RLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILPLFKSG-D 516
L + K G D + + + L++I+N L FP WK + IL + K G
Sbjct: 448 SLPLKKSPGIDNVCNATLKALPVRAILYLALIYNAILRVQFFPKQWKMAAILMIHKPGKP 507
Query: 517 TGMVKNYRPISILTVFAKVFEMVLYPVLS--WHFRQIFATEQHGFIKARSTTTNLMSFVE 690
++YRPIS+L+ +K++E ++ L+ R+I Q GF + ST + +
Sbjct: 508 EESPESYRPISLLSSLSKLWERLIANRLNDIMTERRILPDHQFGFRQGHSTVEQVHRLTK 567
Query: 691 DLTQGVDHGDSLDTIYTD 744
+ Q D + + ++ D
Sbjct: 568 HILQAFDDKEYCNAVFID 585
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 59.3 bits (137), Expect = 6e-09
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Frame = +1
Query: 265 SVESSNMNFLTCISVTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNK 444
S ES N NF VT +++ ++ L++ K G+D L + + L +I+N
Sbjct: 26 SGESGNSNFKP---VTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNN 82
Query: 445 SLSSGVFPLAWKQSLILPLFKSGDTGMVKN-YRPISILTVFAKVFEMVLYPVL--SWHFR 615
L +G FP WK + I + K G + N YRPIS+L+ +K+ E +L L F
Sbjct: 83 ILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFA 142
Query: 616 QIFATEQHGFIKARSTTTNLMSFVEDLTQGVDHGDSLDTIYTDFS 750
+ + Q GF K L + + + D D + D +
Sbjct: 143 KAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDIT 187
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 59.3 bits (137), Expect = 6e-09
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 5/167 (2%)
Frame = +1
Query: 265 SVESSNMNFLTCISVTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNK 444
S ES N NF VT +++ ++ L++ K G+D L + + L +I+N
Sbjct: 473 SGESGNSNFKP---VTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNN 529
Query: 445 SLSSGVFPLAWKQSLILPLFKSGDTGMVKN-YRPISILTVFAKVFEMV----LYPVLSWH 609
L +G FP WK + I + K G + N YRPIS+L+ +K+ E + LY + S
Sbjct: 530 ILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILPKRLYDIDS-- 587
Query: 610 FRQIFATEQHGFIKARSTTTNLMSFVEDLTQGVDHGDSLDTIYTDFS 750
F + + Q GF K L + + + D D + D +
Sbjct: 588 FAKAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDIT 634
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 59.3 bits (137), Expect = 6e-09
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Frame = +1
Query: 265 SVESSNMNFLTCISVTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNK 444
S ES N NF VT +++ ++ L++ K G+D L + + L +I+N
Sbjct: 473 SGESGNSNFKP---VTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNN 529
Query: 445 SLSSGVFPLAWKQSLILPLFKSGDTGMVKN-YRPISILTVFAKVFEMVLYPVL--SWHFR 615
L +G FP WK + I + K G + N YRPIS+L+ +K+ E +L L F
Sbjct: 530 ILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFA 589
Query: 616 QIFATEQHGFIKARSTTTNLMSFVEDLTQGVDHGDSLDTIYTDFS 750
+ + Q GF K L + + + D D + D +
Sbjct: 590 KAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDIT 634
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 59.3 bits (137), Expect = 6e-09
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Frame = +1
Query: 265 SVESSNMNFLTCISVTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNK 444
S ES N NF VT +++ ++ L++ K G+D L + + L +I+N
Sbjct: 473 SGESGNSNFKP---VTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNN 529
Query: 445 SLSSGVFPLAWKQSLILPLFKSGDTGMVKN-YRPISILTVFAKVFEMVLYPVL--SWHFR 615
L +G FP WK + I + K G + N YRPIS+L+ +K+ E +L L F
Sbjct: 530 ILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFA 589
Query: 616 QIFATEQHGFIKARSTTTNLMSFVEDLTQGVDHGDSLDTIYTDFS 750
+ + Q GF K L + + + D D + D +
Sbjct: 590 KAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDIT 634
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 59.3 bits (137), Expect = 6e-09
Identities = 54/247 (21%), Positives = 114/247 (46%), Gaps = 4/247 (1%)
Frame = +1
Query: 19 KRCSKLLHLNYTRYLENLESSLASNPKLIWSFVKHKRSGKITLPGEMSLDDTTATNGSSI 198
K SK+ ++ T+ + + LA P + ++K SG +T +++ + + + S
Sbjct: 343 KFTSKISPVSSTKKVWSDIKRLAGIPPTPFKYIK-SNSGTLTGSFDIAEEFALSWSKYSS 401
Query: 199 CNLFAAHFSSVYNTTSIHSF-IESVESSNMNFLTCISVTKSQIYRVLKRLDVNKGAGSDG 375
F+A + V N + + I+S+ S + + + T +I + + K G+D
Sbjct: 402 DQNFSAEYIRVKNRYLLEPYAIDSLSPSATSLDS--NFTLLEIENSVAKAK-GKSPGADR 458
Query: 376 LPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILPLFK-SGDTGMVKNYRPISI 552
+ + + L + L IFN+ L++G +P W+ ++I+P+ K + + +YRPIS+
Sbjct: 459 VSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAIIIPISKPNKPPSDINSYRPISL 518
Query: 553 LTVFAKVFEMVLYPVLSWHFRQ--IFATEQHGFIKARSTTTNLMSFVEDLTQGVDHGDSL 726
L+ K E ++ L+W ++ + + Q F ST L+ + + + +
Sbjct: 519 LSCLGKTLEKIIAQRLTWFIKRHNLISHNQVAFKSNHSTMDALLRIQHFASNALSTKNHV 578
Query: 727 DTIYTDF 747
+ TDF
Sbjct: 579 SILATDF 585
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 57.6 bits (133), Expect = 2e-08
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Frame = +1
Query: 307 VTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQS 486
+T ++ +K L +K G D + + + + L +I+N L G +P AWK +
Sbjct: 365 ITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHA 424
Query: 487 LILPLFKSG-DTGMVKNYRPISILTVFAKVFEMVLYPVLSW--HFRQIFATEQHGFIKAR 657
+ + K G K+YRPIS+L+ +K+FE +L L F++ Q GF K
Sbjct: 425 QVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEH 484
Query: 658 STTTNLMSFVEDLTQGVDHGDSLDTIYTDFS 750
T + + + + + + ++ D S
Sbjct: 485 GTEQQIARVTQFILEAFERKEYCSAVFLDIS 515
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 57.6 bits (133), Expect = 2e-08
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Frame = +1
Query: 307 VTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQS 486
+T ++ +K L +K G D + + + + L +I+N L G +P AWK +
Sbjct: 481 ITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHA 540
Query: 487 LILPLFKSG-DTGMVKNYRPISILTVFAKVFEMVLYPVLSW--HFRQIFATEQHGFIKAR 657
+ + K G K+YRPIS+L+ +K+FE +L L F++ Q GF K
Sbjct: 541 QVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEH 600
Query: 658 STTTNLMSFVEDLTQGVDHGDSLDTIYTDFS 750
T + + + + + + ++ D S
Sbjct: 601 GTEQQIARVTQFILEAFERKEYCSAVFLDIS 631
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 57.6 bits (133), Expect = 2e-08
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Frame = +1
Query: 307 VTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQS 486
+T ++ +K L +K G D + + + + L +I+N L G +P AWK +
Sbjct: 481 ITLKELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLILIYNSILRIGYYPDAWKHA 540
Query: 487 LILPLFKSG-DTGMVKNYRPISILTVFAKVFEMVLYPVLSW--HFRQIFATEQHGFIKAR 657
+ + K G K+YRPIS+L+ +K+FE +L L F++ Q GF K
Sbjct: 541 QVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEH 600
Query: 658 STTTNLMSFVEDLTQGVDHGDSLDTIYTDFS 750
T + + + + + + ++ D S
Sbjct: 601 GTEQQIARVTQFILEAFERKEYCSAVFLDIS 631
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 57.6 bits (133), Expect = 2e-08
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Frame = +1
Query: 307 VTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQS 486
+T ++ +K L +K G D + + + + L +I+N L G +P AWK +
Sbjct: 443 ITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHA 502
Query: 487 LILPLFKSG-DTGMVKNYRPISILTVFAKVFEMVLYPVLSW--HFRQIFATEQHGFIKAR 657
+ + K G K+YRPIS+L+ +K+FE +L L F++ Q GF K
Sbjct: 503 QVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEH 562
Query: 658 STTTNLMSFVEDLTQGVDHGDSLDTIYTDFS 750
T + + + + + + ++ D S
Sbjct: 563 GTEQQIARVTQFILEAFERKEYCSAVFLDIS 593
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 57.6 bits (133), Expect = 2e-08
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Frame = +1
Query: 307 VTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQS 486
+T ++ +K L +K G D + + + + L +I+N L G +P AWK +
Sbjct: 481 ITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHA 540
Query: 487 LILPLFKSG-DTGMVKNYRPISILTVFAKVFEMVLYPVLSW--HFRQIFATEQHGFIKAR 657
+ + K G K+YRPIS+L+ +K+FE +L L F++ Q GF K
Sbjct: 541 QVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEH 600
Query: 658 STTTNLMSFVEDLTQGVDHGDSLDTIYTDFS 750
T + + + + + + ++ D S
Sbjct: 601 GTEQQIARVTQFILEAFERKEYCSAVFLDIS 631
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 56.8 bits (131), Expect = 3e-08
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Frame = +1
Query: 262 ESVESSNMNFLTCISVTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFN 441
E +ES L +VT ++ ++ +L + K G D L + + L++IFN
Sbjct: 423 EYLESPFQMSLPLSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFN 482
Query: 442 KSLSSGVFPLAWKQSLILPLFKSGDTGM-VKNYRPISILTVFAKVFEMVL 588
L G FP AWK + I+ + K+G T V +YRP S+L K+ E ++
Sbjct: 483 SVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLI 532
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 56.8 bits (131), Expect = 3e-08
Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 11/207 (5%)
Frame = +1
Query: 163 LDDTTATNGSSICNLFAAHFSSVYNTTSI-HSFIESVESSNMNFLT----CISVTKSQIY 327
+++ T + I N+FA HFS + + F + +N++ T ++ ++ Y
Sbjct: 376 VNNETTLASNEIANIFAQHFSDLSGDWNFSEEFRNNKYRNNIHLYTPSPIAQTIEENITY 435
Query: 328 RVLKR-LDVNKGA--GSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILP 498
L L KG G + + + ++ + ++ +FN+ +S + P A+K SLI+P
Sbjct: 436 LELSSALQTLKGCAPGLNRISYQMIKNSSHTTKNRITKLFNEIFNSHI-PQAYKTSLIIP 494
Query: 499 LFKSG-DTGMVKNYRPISILTVFAKVFEMVLYPVLSW--HFRQIFATEQHGFIKARSTTT 669
+ K D +YRPIS+ AK+ + ++ L W + + +Q GF K +ST+
Sbjct: 495 ILKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFKKGKSTSD 554
Query: 670 NLMSFVEDLTQGVDHGDSLDTIYTDFS 750
L+ +V+ L SL T+ DFS
Sbjct: 555 CLL-YVDYLITKSKMHTSLVTL--DFS 578
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 56.8 bits (131), Expect = 3e-08
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Frame = +1
Query: 262 ESVESSNMNFLTCISVTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFN 441
E +ES L +VT ++ ++ +L + K G D L + + L +IFN
Sbjct: 225 EYLESPFQMSLPPSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLVLIFN 284
Query: 442 KSLSSGVFPLAWKQSLILPLFKSGDTGM-VKNYRPISILTVFAKVFEMVL 588
L G FP AWK + I+ + K+G T V +YRPIS+L K+ E ++
Sbjct: 285 SVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPISLLPSLGKIMERLI 334
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 56.4 bits (130), Expect = 4e-08
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Frame = +1
Query: 307 VTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQS 486
+T ++ +K L +K G D + + + + L +I+N L G +P AWK +
Sbjct: 481 ITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHA 540
Query: 487 LILPLFKSG-DTGMVKNYRPISILTVFAKVFEMVLYPVLSW--HFRQIFATEQHGFIKAR 657
+ + K G ++YRPIS+L+ +K+FE +L L F++ Q GF K
Sbjct: 541 QVKMILKPGKSANEPRSYRPISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRKEH 600
Query: 658 STTTNLMSFVEDLTQGVDHGDSLDTIYTDFS 750
+ + + + + + + ++ D S
Sbjct: 601 GSEQQIARVTQFILEAFERKEYCSAVFLDIS 631
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 50.8 bits (116), Expect = 2e-06
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 9/189 (4%)
Frame = +1
Query: 205 LFAAHFSS---VYNTTSIHSFIESVESSNMNFLTCISVTK---SQIYRVLKRLDVNKGAG 366
+FAAH + + S+ E+ + N + +T ++ V+ R NK G
Sbjct: 396 VFAAHLAERFQPFKLASLQQVEETQDQLNQALQMDMPITPFEPCEVAEVIVRQSNNKAPG 455
Query: 367 SDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILPLFKSGDTGMVK-NYRP 543
D + + + ++++FN + FP WK +I + K G +YRP
Sbjct: 456 HDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQWKLGIISMIHKPGKPEREPASYRP 515
Query: 544 ISILTVFAKVFE-MVLYPVLS-WHFRQIFATEQHGFIKARSTTTNLMSFVEDLTQGVDHG 717
IS+L +KVFE ++ ++S + I Q GF T L VE + D
Sbjct: 516 ISLLPSISKVFERLIAVRIVSIMEAQGITPEHQFGFRAGHCTVEQLHRVVEQILTAYDSK 575
Query: 718 DSLDTIYTD 744
+ ++++ D
Sbjct: 576 EYCNSLFLD 584
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 46.8 bits (106), Expect = 3e-05
Identities = 23/64 (35%), Positives = 36/64 (56%)
Frame = +1
Query: 424 LSIIFNKSLSSGVFPLAWKQSLILPLFKSGDTGMVKNYRPISILTVFAKVFEMVLYPVLS 603
+ ++FN G FP WK+S+I+ + K +YRPIS+LT +K+FE L +S
Sbjct: 13 ICLLFNAITKIGYFPQKWKKSIIIMIPKPEKDKTQPSYRPISLLTCLSKLFEKGLLLRIS 72
Query: 604 WHFR 615
H +
Sbjct: 73 PHLK 76
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 45.2 bits (102), Expect = 1e-04
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +1
Query: 340 RLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILPLFKSGDT 519
RL + G DG+ A+ L+ +F++ + G FP WK ++ L K D
Sbjct: 445 RLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVSLLKGPDK 504
Query: 520 GMVK--NYRPISILTVFAKVFEMVL 588
+ +YR I +L VF KV E ++
Sbjct: 505 DKCEPSSYRGICLLPVFGKVLEAIM 529
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,330,978
Number of Sequences: 53049
Number of extensions: 709087
Number of successful extensions: 1869
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1847
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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