Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0525
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 69 5e-12
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 69 5e-12
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 66 3e-11
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 64 8e-11
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 57 2e-08
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 39 0.004
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 38 0.006
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z80215-14|CAI79138.1| 662|Caenorhabditis elegans Hypothetical p... 28 6.2
Z80215-13|CAI79137.1| 640|Caenorhabditis elegans Hypothetical p... 28 6.2
Z80215-12|CAB02277.1| 652|Caenorhabditis elegans Hypothetical p... 28 6.2
Z81041-1|CAB02786.2| 362|Caenorhabditis elegans Hypothetical pr... 25 9.3
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 68.5 bits (160), Expect = 5e-12
Identities = 44/143 (30%), Positives = 67/143 (46%)
Frame = +1
Query: 319 QIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILP 498
+I VL+ K AG D + + F+ C + ++ FN+ L S P WK S
Sbjct: 551 EIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTL 610
Query: 499 LFKSGDTGMVKNYRPISILTVFAKVFEMVLYPVLSWHFRQIFATEQHGFIKARSTTTNLM 678
+FK GD ++NYRPI +L V KVF L + + EQ GF ++ ST ++
Sbjct: 611 IFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGFRRSFSTIDHIH 670
Query: 679 SFVEDLTQGVDHGDSLDTIYTDF 747
S L G ++ L ++ DF
Sbjct: 671 SLQRLLEVGREYQIPLTLVFIDF 693
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 68.5 bits (160), Expect = 5e-12
Identities = 44/143 (30%), Positives = 67/143 (46%)
Frame = +1
Query: 319 QIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILP 498
+I VL+ K AG D + + F+ C + ++ FN+ L S P WK S
Sbjct: 290 EIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTL 349
Query: 499 LFKSGDTGMVKNYRPISILTVFAKVFEMVLYPVLSWHFRQIFATEQHGFIKARSTTTNLM 678
+FK GD ++NYRPI +L V KVF L + + EQ GF ++ ST ++
Sbjct: 350 IFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGFRRSFSTIDHIH 409
Query: 679 SFVEDLTQGVDHGDSLDTIYTDF 747
S L G ++ L ++ DF
Sbjct: 410 SLQRLLEVGREYQIPLTLVFIDF 432
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 65.7 bits (153), Expect = 3e-11
Identities = 43/143 (30%), Positives = 66/143 (46%)
Frame = +1
Query: 319 QIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILP 498
+I L+ K AG D + + F+ C + ++ FN+ L S P WK S
Sbjct: 380 KIRYALRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTL 439
Query: 499 LFKSGDTGMVKNYRPISILTVFAKVFEMVLYPVLSWHFRQIFATEQHGFIKARSTTTNLM 678
+FK GD ++NYRPI +L V KVF L + + EQ GF ++ ST ++
Sbjct: 440 IFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGFRRSFSTIDHIH 499
Query: 679 SFVEDLTQGVDHGDSLDTIYTDF 747
S L G ++ L ++ DF
Sbjct: 500 SLQRLLEVGREYQIPLTLVFIDF 522
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 64.5 bits (150), Expect = 8e-11
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 8/216 (3%)
Frame = +1
Query: 88 SNPKLIWSFVKHKRSGKITLPGEMSLDDTTATNGSSICNLFAAHFSSVYNTTSIHS---- 255
S+ W +K G+ G ++ D G++I N A T H
Sbjct: 249 SDVSSFWKLIKGVTKGR-QYKGPVAFGDGLPKTGATIANKMAKSLVEAGRTKISHDEELK 307
Query: 256 FIESVE-SSNMNFLTCIS--VTKSQIYRVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPL 426
+ ++V + ++ + + +T +++ + ++ + G DG+ I + + S L
Sbjct: 308 WRKNVRRNKRISKIAPLQDRITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFL 367
Query: 427 SIIFNKSLSSGVFPLAWKQSLILPLFK-SGDTGMVKNYRPISILTVFAKVFEMVLYPVLS 603
+ ++N SLS+ + P WK++ ++ + K D + +YRPIS+L+ AK+ E + +
Sbjct: 368 AYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIK 427
Query: 604 WHFRQIFATEQHGFIKARSTTTNLMSFVEDLTQGVD 711
QHGF STTT ++ D+ G++
Sbjct: 428 NSIES--PAHQHGFKPEHSTTTAVIQVTNDIIGGLN 461
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 56.8 bits (131), Expect = 2e-08
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Frame = +1
Query: 37 LHLNYTRYLENLESSLASNPKL--IWSFVKHKRSGKITLPGEMSLDDTTATNGSS----I 198
L+ N+ +Y+ E+ + +N I + + + +P + LD+ + N S
Sbjct: 669 LYRNFRKYVRRFENDIIANSNFTKIRRLINSRLKSQNLVPS-IILDNKSIVNDSEKSEIF 727
Query: 199 CNLFAAHFS--SVYNTTSIHSFIESVESSNMNFL-TCISVTKSQIYR---VLKRLDVNKG 360
+FA+H+S S + S+HS + SS N T + + Q Y VL +L G
Sbjct: 728 AKIFASHYSDDSSQSQNSLHSPSPTSHSSLQNQTSTSLHLDSFQPYMIESVLSKLPPKCG 787
Query: 361 AGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILPLFKSG 513
+ + +CA L+ PLSII+ +S + P WK+++I+P+ K G
Sbjct: 788 FSPHCANYLVLKKCATPLAFPLSIIYKQSFADSKIPDCWKKAIIIPIPKKG 838
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +1
Query: 355 KGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILPLFKSGD 516
K AGSD + + F+ C + ++ FN+ L SG P WK S +FK GD
Sbjct: 412 KAAGSDKITADFLKSCGDYVIRLITGRFNRYLESGNIPKDWKTSKTTLIFKKGD 465
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Frame = +1
Query: 154 EMSLDDTTATNGSSICNLFAAHFSSVYNTTSIHSFIESVESSNMNFLTCI--SVTKSQIY 327
++ +DD + S + FA+ FSS + + E+ ++ +N S+ K +
Sbjct: 711 DLMIDDKLISRNSGKASCFASIFSSKFKDQNSTQIPENTDNKTINASQIFEQSMVKQALE 770
Query: 328 RVLKRLDVNKGAGSDGLPSIFVSRCAYALSSPLSIIFNKSLSSGVFPLAWKQSLILP 498
V R +K + ++ CA +L++PLS I + +P +W +++P
Sbjct: 771 HVTPRFHFDK------TNILVLNNCANSLAAPLSRILRNIFETEDYPESWNHCIVIP 821
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 31.9 bits (69), Expect = 0.50
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 685 VEDLTQGVDHGDSLDTIYTDFS 750
+ D T+ +DHG+ +D IY DFS
Sbjct: 1 MNDWTKSIDHGEQIDIIYLDFS 22
>Z80215-14|CAI79138.1| 662|Caenorhabditis elegans Hypothetical
protein C36B1.12c protein.
Length = 662
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 103 IWSFVKHKRSGKITLPGEMSLDDTTATNGSSICNLFAAHFSSV 231
IW+F +H+ +TL + DDT++ + S F F +
Sbjct: 250 IWAFNRHRAGKDVTLASQSVDDDTSSPSNDSETKGFLDRFGGI 292
>Z80215-13|CAI79137.1| 640|Caenorhabditis elegans Hypothetical
protein C36B1.12b protein.
Length = 640
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 103 IWSFVKHKRSGKITLPGEMSLDDTTATNGSSICNLFAAHFSSV 231
IW+F +H+ +TL + DDT++ + S F F +
Sbjct: 250 IWAFNRHRAGKDVTLASQSVDDDTSSPSNDSETKGFLDRFGGI 292
>Z80215-12|CAB02277.1| 652|Caenorhabditis elegans Hypothetical
protein C36B1.12a protein.
Length = 652
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 103 IWSFVKHKRSGKITLPGEMSLDDTTATNGSSICNLFAAHFSSV 231
IW+F +H+ +TL + DDT++ + S F F +
Sbjct: 250 IWAFNRHRAGKDVTLASQSVDDDTSSPSNDSETKGFLDRFGGI 292
>Z81041-1|CAB02786.2| 362|Caenorhabditis elegans Hypothetical
protein C27A7.2 protein.
Length = 362
Score = 24.6 bits (51), Expect(2) = 9.3
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +1
Query: 208 FAAHFSSVYNTTSI------HSFIESVESSNMNFLTCISVTKSQIYRVLK 339
F A ++ NTTS+ H F+++ S+ NF +S KS + + K
Sbjct: 229 FNAEWAKQPNTTSLVYGRREHEFVKAETLSDFNFYELVSSLKSSLVKAGK 278
Score = 21.4 bits (43), Expect(2) = 9.3
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +1
Query: 34 LLHLNYTRYLENLESSLASNP 96
L LNY YLE + A P
Sbjct: 217 LFPLNYPTYLEEFNAEWAKQP 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,367,284
Number of Sequences: 27780
Number of extensions: 374212
Number of successful extensions: 935
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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