BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0525 (750 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g40510.1 68418.m04914 expressed protein 29 3.3 At3g09670.1 68416.m01146 PWWP domain-containing protein 29 4.4 At5g61240.1 68418.m07681 leucine-rich repeat family protein cont... 28 5.8 At3g12710.1 68416.m01588 methyladenine glycosylase family protei... 28 5.8 At1g03080.1 68414.m00282 kinase interacting family protein simil... 28 7.6 >At5g40510.1 68418.m04914 expressed protein Length = 333 Score = 29.1 bits (62), Expect = 3.3 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Frame = +1 Query: 178 ATNGSSICNLFAAHFSSVYNTTSIHSFIESVESSNM--NFLTCISVTKSQIYRVLKRLDV 351 +TN ++ +A H +Y T +++ VE + F T + KS + V +L+V Sbjct: 27 STNIANSITSYARHVFVLYKTPE--AWLSHVEEEGLPQRFATLLKDRKSDLL-VQTKLNV 83 Query: 352 NKGAGSDGLPSIFVSRCAY 408 +G GSDG IF Y Sbjct: 84 CEGGGSDGDVLIFPDMIRY 102 >At3g09670.1 68416.m01146 PWWP domain-containing protein Length = 726 Score = 28.7 bits (61), Expect = 4.4 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%) Frame = +1 Query: 166 DDTTATNGSSICNLFAAHFSSVYNTTSIHSFIESVE------SSNMNFLTCISVTKSQIY 327 D T A N +S F HFS + +S+ FI++++ S + F S ++Y Sbjct: 243 DCTFAWNEASRIKPFRQHFSQMAKQSSLPDFIDAIDFALEEVSRRIEFGLACSCISEEVY 302 Query: 328 RVLKRLDV-NKGAGSD 372 + +K +V N G D Sbjct: 303 QKIKTQNVINPGIRED 318 >At5g61240.1 68418.m07681 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to Hcr2-0B [Lycopersicon esculentum] gi|3894387|gb|AAC78593 Length = 380 Score = 28.3 bits (60), Expect = 5.8 Identities = 10/38 (26%), Positives = 27/38 (71%), Gaps = 1/38 (2%) Frame = +1 Query: 31 KLLHLNYTRYLENLESSLASNPKLIWSFVKHKR-SGKI 141 ++++L+Y +++ N+ ++A PKL + ++ H + +G+I Sbjct: 301 EIVYLSYNKFIGNIPFAIAHIPKLTYLYLDHNQFTGRI 338 >At3g12710.1 68416.m01588 methyladenine glycosylase family protein similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylase Length = 312 Score = 28.3 bits (60), Expect = 5.8 Identities = 19/77 (24%), Positives = 35/77 (45%) Frame = +1 Query: 70 LESSLASNPKLIWSFVKHKRSGKITLPGEMSLDDTTATNGSSICNLFAAHFSSVYNTTSI 249 ++ + S K +W FV HK G + T+ + S ++ F V T + Sbjct: 225 IKKAFVSLEKYLWGFVNHKPISTNYKLGH-KIPVKTSKSESISKDMVRRGFRFV-GPTVV 282 Query: 250 HSFIESVESSNMNFLTC 300 HSF+++ +N + +TC Sbjct: 283 HSFMQAAGLTNDHLITC 299 >At1g03080.1 68414.m00282 kinase interacting family protein similar to kinase interacting protein 1 (GI:13936326) [Petunia integrifolia] Length = 1744 Score = 27.9 bits (59), Expect = 7.6 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = +1 Query: 292 LTCISVTKSQIYRVLKRLDVNKGAGS 369 + CI + ++ IY+VL +L++ G GS Sbjct: 933 INCIKILRTGIYQVLMKLEIIPGIGS 958 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,441,933 Number of Sequences: 28952 Number of extensions: 348121 Number of successful extensions: 858 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 842 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 857 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1663169840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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