Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0525
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40510.1 68418.m04914 expressed protein                             29   3.3  
At3g09670.1 68416.m01146 PWWP domain-containing protein                29   4.4  
At5g61240.1 68418.m07681 leucine-rich repeat family protein cont...    28   5.8  
At3g12710.1 68416.m01588 methyladenine glycosylase family protei...    28   5.8  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    28   7.6  

>At5g40510.1 68418.m04914 expressed protein
          Length = 333

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +1

Query: 178 ATNGSSICNLFAAHFSSVYNTTSIHSFIESVESSNM--NFLTCISVTKSQIYRVLKRLDV 351
           +TN ++    +A H   +Y T    +++  VE   +   F T +   KS +  V  +L+V
Sbjct: 27  STNIANSITSYARHVFVLYKTPE--AWLSHVEEEGLPQRFATLLKDRKSDLL-VQTKLNV 83

Query: 352 NKGAGSDGLPSIFVSRCAY 408
            +G GSDG   IF     Y
Sbjct: 84  CEGGGSDGDVLIFPDMIRY 102


>At3g09670.1 68416.m01146 PWWP domain-containing protein
          Length = 726

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
 Frame = +1

Query: 166 DDTTATNGSSICNLFAAHFSSVYNTTSIHSFIESVE------SSNMNFLTCISVTKSQIY 327
           D T A N +S    F  HFS +   +S+  FI++++      S  + F    S    ++Y
Sbjct: 243 DCTFAWNEASRIKPFRQHFSQMAKQSSLPDFIDAIDFALEEVSRRIEFGLACSCISEEVY 302

Query: 328 RVLKRLDV-NKGAGSD 372
           + +K  +V N G   D
Sbjct: 303 QKIKTQNVINPGIRED 318


>At5g61240.1 68418.m07681 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 380

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/38 (26%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +1

Query: 31  KLLHLNYTRYLENLESSLASNPKLIWSFVKHKR-SGKI 141
           ++++L+Y +++ N+  ++A  PKL + ++ H + +G+I
Sbjct: 301 EIVYLSYNKFIGNIPFAIAHIPKLTYLYLDHNQFTGRI 338


>At3g12710.1 68416.m01588 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 312

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = +1

Query: 70  LESSLASNPKLIWSFVKHKRSGKITLPGEMSLDDTTATNGSSICNLFAAHFSSVYNTTSI 249
           ++ +  S  K +W FV HK        G   +   T+ + S   ++    F  V   T +
Sbjct: 225 IKKAFVSLEKYLWGFVNHKPISTNYKLGH-KIPVKTSKSESISKDMVRRGFRFV-GPTVV 282

Query: 250 HSFIESVESSNMNFLTC 300
           HSF+++   +N + +TC
Sbjct: 283 HSFMQAAGLTNDHLITC 299


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 292  LTCISVTKSQIYRVLKRLDVNKGAGS 369
            + CI + ++ IY+VL +L++  G GS
Sbjct: 933  INCIKILRTGIYQVLMKLEIIPGIGS 958


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,441,933
Number of Sequences: 28952
Number of extensions: 348121
Number of successful extensions: 858
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)